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BaseInfo

ncRNA ID ath-miRf10512-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 24
Mature sequence(if miRNA) NA - CCACUCGACCACGAGGUCGAGUGU - NA
Stem-loop(if miRNA)       C        C C         --A    ACAUCA
GAAGAC ACUCGACC C UGGUCGAGU   GAGG      C
|||||| |||||||| | |||||||||   ||||
CUUCUG UGAGCUGG G ACCAGCUCA   CUCC      A
      -        A C         CCA    ACUUAA
Stem-loop sequence GAAGACCACUCGACCCCCUGGUCGAGUAGAGGACAUCACAAAUUCACCUCACCACUCGACCACGAGGUCGAGUGUCUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EF183005.1
ncRNA:24   UGUGAGCUGGAGCACCAGCUCACC   1
  *=||||||||||*|||||||||||
targets:2014   CUACUCGACCUCUUGGUCGAGUGG   2037

1.5 Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence NA coding protein psRNATarget
NM_103391.1
ncRNA:24   UGUGAGCUGGAGCACCAGCUCACC   1
  *|||||||||*||||||||||||*
targets:1209   CCACUCGACCCCGUGGUCGAGUGU   1232

2.0 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
EF183005.1
ncRNA:24   UGUGAGCUGGAGCACCAGCUCACC   1
  =||||||||||||*|||||||||*
targets:1864   GCACUCGACCUCGAGGUCGAGUGA   1887

2.5 Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence NA coding protein psRNATarget
EF183005.1
ncRNA:24   UGUGAGCUGGAGCACCAGCUCACC   1
  =|||||||||*||*||||||||||
targets:1923   GCACUCGACCACGGGGUCGAGUGG   1946

2.5 Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence NA coding protein psRNATarget
AY231407.1
ncRNA:24   UGUGAGCUGGAGCACCAGCUCACC   1
  *|||||||||*|||||||||||*|
targets:489   CCACUCGACCCCGUGGUCGAGUAG   512

2.5 Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds NA coding protein psRNATarget