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BaseInfo

ncRNA ID novel_ath_miR715
Species Arabidopsis thaliana
Class miRNA
Genome position Chr1:16863309-16863390 [-]
Reference genome TAIR10
Source SRR3992494
Length 24
Mature sequence(if miRNA) 1 - UUUCUGGGCUGUUGACUAUAAUAC - 24
Stem-loop(if miRNA) --    C   -    C   G     -CUC       ---    G
  AUUG UAG CAAC GUC GGAAG    UUUUACG   CAGG U
  |||| ||| |||| ||| |||||    |||||||   ||||
  UAAU AUC GUUG CGG UCUUU    AAAAUGC   GUUC C
CA    -   A    U   G     CUUC       AUG    U
Stem-loop sequence AUUGCUAGCAACCGUCGGGAAGCUCUUUUACGCAGGGUCUCUUGGUACGUAAAACUUCUUUCUGGGCUGUUGACUAUAAUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
DQ056562.1
ncRNA:24   CAUAAUAUCAGUUGUCGGGUCUUU   1
  |**|||||*|||||||=|||||||
targets:1200   GGCUUAUAUUCAACAGUCCAGAAA   1223

2.5 Arabidopsis thaliana tryptophan/tyrosine permease family protein (At2g33260) mRNA, complete cds NA coding protein psRNATarget
NM_128886.2
ncRNA:24   CAUAAUAUCAGUUGUCGGGUCUUU   1
  |**|||||*|||||||=|||||||
targets:1376   GGCUUAUAUUCAACAGUCCAGAAA   1399

2.5 Arabidopsis thaliana Tryptophan/tyrosine permease mRNA Tryptophan/tyrosine permease(AT2G33260) coding protein psRNATarget
NM_001336441.1
ncRNA:24   CAUAAUAUCAGUUGUCGGGUCUUU   1
  |**|||||*|||||||=|||||||
targets:1619   GGCUUAUAUUCAACAGUCCAGAAA   1642

2.5 Arabidopsis thaliana Tryptophan/tyrosine permease mRNA Tryptophan/tyrosine permease(AT2G33260) coding protein psRNATarget