A ncRNA database for oil producing plants

Search result

ncRNA ID	novel_ath_miR706
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr3:18085577-18085800 [+]
Reference genome	TAIR10
Source	SRR3992491
Length	24
Mature sequence(if miRNA)	1 - AAAUUUUCCCGAACAAUACAUGAG - 24
Stem-loop(if miRNA)	-- C C C U A U A AAAUUUU CCGAACAAUACAUGAGUUAAUUUUUAUGU CUUUAAAAAC UUCGUUUGUUUAAAUUUUGGUAAAAUCAGAUAUCCGAGUUAACG CUGUU AG UUUAAC U \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\| \|\|\|\|\|\| UUUAAAA GGCUUGUUAUGUACUCAAUUAAAAAUACA GAAAUUUUUG AAGCAAACAAAUUUAAAACCAUUUUAGUCUAUAGGCUCAAUUGC GACAA UU GAAUUG A AA A A A C A U G
Stem-loop sequence	AAAUUUUCCCGAACAAUACAUGAGUUAAUUUUUAUGUCCUUUAAAAACCUUCGUUUGUUUAAAUUUUGGUAAAAUCAGAUAUCCGAGUUAACGUCUGUUAAGUUUUAACAUAGGUUAAGUUUAAACAGCCGUUAACUCGGAUAUCUGAUUUUACCAAAAUUUAAACAAACGAAAGUUUUUAAAGAACAUAAAAAUUAACUCAUGUAUUGUUCGGAAAAAUUUAA

Target Acc

Alignment

Exception

Target Description

Target Gene Name

Target Type

Method

NM_179270.2

ncRNA:24	GA--GU-ACAUAACAAGCCCUUUUAAA	1
	\|\|--\|\|-\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:3458	CUAGCACUGUAUUGUUGGGGAAAAUUA	3484

2.5

Arabidopsis thaliana global transcription factor group E4 (GTE4), mRNA

global transcription factor group E4(GTE4)

coding protein

NM_001331622.1

ncRNA:24	GA--GU-ACAUAACAAGCCCUUUUAAA	1
	\|\|--\|\|-\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:3379	CUAGCACUGUAUUGUUGGGGAAAAUUA	3405

2.5

Arabidopsis thaliana global transcription factor group E4 (GTE4), mRNA

global transcription factor group E4(GTE4)

coding protein

NM_100505.3

ncRNA:24	GA--GU-ACAUAACAAGCCCUUUUAAA	1
	\|\|--\|\|-\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:3287	CUAGCACUGUAUUGUUGGGGAAAAUUA	3313

2.5

Arabidopsis thaliana global transcription factor group E4 (GTE4), mRNA

global transcription factor group E4(GTE4)

coding protein