Search result

BaseInfo

ncRNA ID	ath-miRf10506-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - UGAACUUGGCUUGUGGGUCU - NA
Stem-loop(if miRNA)	C                 U       C        UGCA      G          --------------    - U    ACCAUCCAUGGCACC AUACGUC UUAGACCCACAAGCCAA UUCAAUU UGGUUAGA    UGAUUU UGUUCACAGU              GGUU C UGGA               U ||||||| ||||||||||||||||| ||||||| ||||||||    |||||| ||||||||||              |||| | ||||               U UAUGCAG AAUCUGGGUGUUCGGUU AAGUUAA ACCAAUCU    ACUGAA ACAAGUGUCA              UUUG U GAAA               A        C                 C       U        ----      A          UUUAAAGUUCUAAC    C -    UCACUGAUUUUACAA
Stem-loop sequence	AUACGUCCUUAGACCCACAAGCCAAUUUCAAUUCUGGUUAGAUGCAUGAUUUGUGUUCACAGUGGUUCUUGGAACCAUCCAUGGCACCUUAAACAUUUUAGUCACUAAAGUCGUUUCAAUCUUGAAAUUUACUGUGAACAAAAGUCAUCUAACCAUAAUUGAACUUGGCUUGUGGGUCUAACGACGUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AF370287.1	ncRNA:20   UCUGGGUGUUCGGUUCAAGU   1   |*||=||||||||||||||| targets:79   AAACUCACAAGCCAAGUUCA   98 Target Full Sequence	2.0	Arabidopsis thaliana putative trehalose-6-phosphate synthase (At1g78580) mRNA, partial cds	NA	coding protein	psRNATarget
KJ138926.1	ncRNA:20   UCUGGGUGUUCGGUUCAAGU   1   |*||=||||||||||||||| targets:1243   AAACUCACAAGCCAAGUUCA   1262 Target Full Sequence	2.0	Arabidopsis thaliana glycosyltransferase (AT1G78580) mRNA, partial cds	NA	coding protein	psRNATarget
Y08568.1	ncRNA:20   UCUGGGUGUUCGGUUCAAGU   1   |*||=||||||||||||||| targets:1294   ACACUCACAAGCCAAGUUCA   1313 Target Full Sequence	2.0	A.thaliana mRNA for trehalose-6-phosphate synthase	NA	coding protein	psRNATarget
NM_106505.5	ncRNA:20   UCUGGGUGUUCGGUUCAAGU   1   |*||=||||||||||||||| targets:1449   AAACUCACAAGCCAAGUUCA   1468 Target Full Sequence	2.0	Arabidopsis thaliana trehalose-6-phosphate synthase (TPS1), partial mRNA	trehalose-6-phosphate synthase(TPS1)	coding protein	psRNATarget
NM_001334834.1	ncRNA:20   UCUGGGUGUUCGGUUCAAGU   1   |*||=||||||||||||||| targets:3185   AAACUCACAAGCCAAGUUCA   3204 Target Full Sequence	2.0	Arabidopsis thaliana trehalose-6-phosphate synthase (TPS1), partial mRNA	trehalose-6-phosphate synthase(TPS1)	coding protein	psRNATarget
NM_001334833.1	ncRNA:20   UCUGGGUGUUCGGUUCAAGU   1   |*||=||||||||||||||| targets:3218   AAACUCACAAGCCAAGUUCA   3237 Target Full Sequence	2.0	Arabidopsis thaliana trehalose-6-phosphate synthase (TPS1), partial mRNA	trehalose-6-phosphate synthase(TPS1)	coding protein	psRNATarget
NM_001334832.1	ncRNA:20   UCUGGGUGUUCGGUUCAAGU   1   |*||=||||||||||||||| targets:3259   AAACUCACAAGCCAAGUUCA   3278 Target Full Sequence	2.0	Arabidopsis thaliana trehalose-6-phosphate synthase (TPS1), mRNA	trehalose-6-phosphate synthase(TPS1)	coding protein	psRNATarget