Search result

BaseInfo

ncRNA ID novel_ath_miR702
Species Arabidopsis thaliana
Class miRNA
Genome position Chr2:11555458-11555663 [-]
Reference genome TAIR10
Source SRR3992490
Length 24
Mature sequence(if miRNA) 1 - UUUUUGGAUUUUGAAGUUUAGACC - 24
Stem-loop(if miRNA) --UGA           AUU       C   A  - G   UUUU          AUCUAAAAAUACACAAAA   ACUAAUAUAUCCAAAAAAAUCCUAAUAUUUUCUAUAUAUAA
     AAAUUUCAAAA   UCCAAAA AAC CG A UAG    GCUUGAAUAU                  AUA                                         G
     |||||||||||   ||||||| ||| || | |||    ||||||||||                  |||
     UUUGAAGUUUU   AGGUUUU UUG GC U GUC    UGGACUUAUG                  UAG                                         U
CCAGA           ---       -   A  U G   ---U          ----------------CA   GUUUGUAUAGAGUUUAUAUUUAUAUAUAAUCAAUGUAAAUA
Stem-loop sequence UGAAAAUUUCAAAAAUUUCCAAAACAACACGAGUAGUUUUGCUUGAAUAUAUCUAAAAAUACACAAAAAUAACUAAUAUAUCCAAAAAAAUCCUAAUAUUUUCUAUAUAUAAGUAUAAAUGUAACUAAUAUAUAUUUAUAUUUGAGAUAUGUUUGGAUACGUAUUCAGGUUCUGGUUCGAGUUUUUUGGAUUUUGAAGUUUAGACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BX818629.1
ncRNA:24   CCAGAUUUGAAGUUUUAGGUUUUU   1
  **|*|||*||||||||||||||||
targets:93   UUUGUAAUCUUCAAAAUCCAAAAA   116

1.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL89ZB11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget