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BaseInfo

ncRNA ID	ath-miRf10505-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - ACCUACAUACUUGUUCGUCA - NA
Stem-loop(if miRNA)	U         A      A               CAAAAAG   G  GGAGUUUGA GAACAA UAUGUGGGUAAAAGG       GAU C  ||||||||| |||||| |||||||||||||||       |||  CCUCGAACU CUUGUU AUACAUCCAUUUUCU       CUA A A         G      C               --AAUAA   G
Stem-loop sequence	UGGAGUUUGAAGAACAAAUAUGUGGGUAAAAGGCAAAAAGGAUGCAGAUCAAUAAUCUUUUACCUACAUACUUGUUCGUCAAGCUCCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_202681.2	ncRNA:20   ACUGCUUGUUCAUACAUCCA   1   |||||||||||||||||||| targets:1048   UGACGAACAAGUAUGUAGGU   1067 Target Full Sequence	0.0	Arabidopsis thaliana RING/U-box superfamily protein mRNA	RING/U-box superfamily protein(AT3G51325)	coding protein	psRNATarget
AY150462.1	ncRNA:20   ACUGCUUGUUCAUACAUCCA   1   *||*|||||||||||||||| targets:566   AGAGGAACAAGUAUGUAGGU   585 Target Full Sequence	1.0	Arabidopsis thaliana putative phosphoglycerate dehydrogenase (At4g34200) mRNA, complete cds	NA	coding protein	psRNATarget
AY084236.1	ncRNA:20   ACUGCUUGUUCAUACAUCCA   1   *||*|||||||||||||||| targets:595   AGAGGAACAAGUAUGUAGGU   614 Target Full Sequence	1.0	Arabidopsis thaliana clone 100571 mRNA, complete sequence	NA	coding protein	psRNATarget
AY063810.1	ncRNA:20   ACUGCUUGUUCAUACAUCCA   1   *||*|||||||||||||||| targets:627   AGAGGAACAAGUAUGUAGGU   646 Target Full Sequence	1.0	Arabidopsis thaliana putative phosphoglycerate dehydrogenase (At4g34200) mRNA, complete cds	NA	coding protein	psRNATarget
NM_119583.4	ncRNA:20   ACUGCUUGUUCAUACAUCCA   1   *||*|||||||||||||||| targets:671   AGAGGAACAAGUAUGUAGGU   690 Target Full Sequence	1.0	Arabidopsis thaliana D-3-phosphoglycerate dehydrogenase (EDA9), mRNA	D-3-phosphoglycerate dehydrogenase(EDA9)	coding protein	psRNATarget
NM_120387.1	ncRNA:20   ACUGCUUGUUCAUACAUCCA   1   *||||||||||||||*|||| targets:8   CGACGAACAAGUAUGGAGGU   27 Target Full Sequence	1.5	Arabidopsis thaliana Mto 1 responding down protein partial mRNA	Mto 1 responding down protein(AT5G03090)	coding protein	psRNATarget
NM_001341480.1	ncRNA:20   ACUGCUUGUUCAUACAUCCA   1   *||*||||||||*||||||| targets:941   AGAAGAACAAGUCUGUAGGU   960 Target Full Sequence	2.5	Arabidopsis thaliana cysteine-rich RLK (RECEPTOR-like protein kinase) 28 (CRK28), partial mRNA	cysteine-rich RLK (RECEPTOR-like protein kinase) 28(CRK28)	coding protein	psRNATarget
NM_001341486.1	ncRNA:20   ACUGCUUGUUCAUACAUCCA   1   *||*||||||||*||||||| targets:863   AGAAGAACAAGUCUGUAGGU   882 Target Full Sequence	2.5	Arabidopsis thaliana cysteine-rich RLK (RECEPTOR-like protein kinase) 28 (CRK28), partial mRNA	cysteine-rich RLK (RECEPTOR-like protein kinase) 28(CRK28)	coding protein	psRNATarget
NM_001341485.1	ncRNA:20   ACUGCUUGUUCAUACAUCCA   1   *||*||||||||*||||||| targets:941   AGAAGAACAAGUCUGUAGGU   960 Target Full Sequence	2.5	Arabidopsis thaliana cysteine-rich RLK (RECEPTOR-like protein kinase) 28 (CRK28), partial mRNA	cysteine-rich RLK (RECEPTOR-like protein kinase) 28(CRK28)	coding protein	psRNATarget
NM_001341484.1	ncRNA:20   ACUGCUUGUUCAUACAUCCA   1   *||*||||||||*||||||| targets:941   AGAAGAACAAGUCUGUAGGU   960 Target Full Sequence	2.5	Arabidopsis thaliana cysteine-rich RLK (RECEPTOR-like protein kinase) 28 (CRK28), partial mRNA	cysteine-rich RLK (RECEPTOR-like protein kinase) 28(CRK28)	coding protein	psRNATarget
NM_001341482.1	ncRNA:20   ACUGCUUGUUCAUACAUCCA   1   *||*||||||||*||||||| targets:941   AGAAGAACAAGUCUGUAGGU   960 Target Full Sequence	2.5	Arabidopsis thaliana cysteine-rich RLK (RECEPTOR-like protein kinase) 28 (CRK28), partial mRNA	cysteine-rich RLK (RECEPTOR-like protein kinase) 28(CRK28)	coding protein	psRNATarget
NM_001341481.1	ncRNA:20   ACUGCUUGUUCAUACAUCCA   1   *||*||||||||*||||||| targets:941   AGAAGAACAAGUCUGUAGGU   960 Target Full Sequence	2.5	Arabidopsis thaliana cysteine-rich RLK (RECEPTOR-like protein kinase) 28 (CRK28), partial mRNA	cysteine-rich RLK (RECEPTOR-like protein kinase) 28(CRK28)	coding protein	psRNATarget
NM_001341483.1	ncRNA:20   ACUGCUUGUUCAUACAUCCA   1   *||*||||||||*||||||| targets:941   AGAAGAACAAGUCUGUAGGU   960 Target Full Sequence	2.5	Arabidopsis thaliana cysteine-rich RLK (RECEPTOR-like protein kinase) 28 (CRK28), partial mRNA	cysteine-rich RLK (RECEPTOR-like protein kinase) 28(CRK28)	coding protein	psRNATarget
NM_001341487.1	ncRNA:20   ACUGCUUGUUCAUACAUCCA   1   *||*||||||||*||||||| targets:1321   AGAAGAACAAGUCUGUAGGU   1340 Target Full Sequence	2.5	Arabidopsis thaliana cysteine-rich RLK (RECEPTOR-like protein kinase) 28 (CRK28), mRNA	cysteine-rich RLK (RECEPTOR-like protein kinase) 28(CRK28)	coding protein	psRNATarget
AY042858.1	ncRNA:20   ACUGCU---UGUUCAUACAUCCA   1   *|||||---|||||||||||||| targets:303   GGACGAGAAACAAGUAUGUAGGU   325 Target Full Sequence	3.0	Arabidopsis thaliana phosphoglycerate dehydrogenase (MLD14.22) mRNA, partial cds	NA	coding protein	psRNATarget
BX824744.1	ncRNA:20   ACUGCU---UGUUCAUACAUCCA   1   *|||||---|||||||||||||| targets:577   GGACGAGAAACAAGUAUGUAGGU   599 Target Full Sequence	3.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH6ZB12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_112835.4	ncRNA:20   ACUGCU---UGUUCAUACAUCCA   1   *|||||---|||||||||||||| targets:686   GGACGAGAAACAAGUAUGUAGGU   708 Target Full Sequence	3.0	Arabidopsis thaliana D-3-phosphoglycerate dehydrogenase mRNA	D-3-phosphoglycerate dehydrogenase(AT3G19480)	coding protein	psRNATarget