Search result

BaseInfo

ncRNA ID ath-miR156i
Species Arabidopsis thaliana
Class miRNA
Genome position chr1:19806917-19807113 [-]
Reference genome TAIR10
Source miRBase
Length 20
Mature sequence(if miRNA) 174 - UGACAGAAGAGAGAGAGCAG - 193
Stem-loop(if miRNA) UA     CA     - AG     ----------AGA   CUUCUCUAUCUAAUCUGUGGUCGCUUGAAUGAUGAGUUUGGCAUAGGAAGUGUCAUCUCUACCC
  GAUGA  GAAGA G  AGAGC             CAG                                                                U
  |||||  ||||| |  |||||             |||
  UUACU  CUUCU C  UCUCG             GAA                                                                U
UG     CG     U CU     AGACCACUCUCAU   UACCUCUUCCUAGUCCAGCCUCUCCUUAGUUACCAGUCCACCACUACGUCUUAGUUCUUUCUAG
Stem-loop sequence UAGAUGACAGAAGAGAGAGAGCAGACAGCUUCUCUAUCUAAUCUGUGGUCGCUUGAAUGAUGAGUUUGGCAUAGGAAGUGUCAUCUCUACCCUUGAUCUUUCUUGAUUCUGCAUCACCACCUGACCAUUGAUUCCUCUCCGACCUGAUCCUUCUCCAUAAGUACUCUCACCAGAGCUCUUCCUUCUUCGCUCAUUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_104194.4
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  ||||||||||||||||||||
targets:750   CUGCUCUCUCUCUUCUGUCA   769

0.0 Arabidopsis thaliana squamosa promoter binding protein-like 4 (SPL4), mRNA squamosa promoter binding protein-like 4(SPL4) coding protein psRNATarget
AY084902.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  ||||||||||||||||||||
targets:586   CUGCUCUCUCUCUUCUGUCA   605

0.0 Arabidopsis thaliana clone 12071 mRNA, complete sequence NA coding protein psRNATarget
BT002856.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  ||||||||||||||||||||
targets:593   CUGCUCUCUCUCUUCUGUCA   612

0.0 Arabidopsis thaliana clone RAFL15-05-B10 (R20352) putative transcription factor (At1g53160) mRNA, complete cds NA coding protein psRNATarget
AJ011632.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  ||||||||||||||||||||
targets:514   CUGCUCUCUCUCUUCUGUCA   533

0.0 Arabidopsis thaliana (ecotype Landsberg erecta) mRNA for squamosa promoter binding protein-like 4, partial NA coding protein psRNATarget
AJ011631.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  ||||||||||||||||||||
targets:558   CUGCUCUCUCUCUUCUGUCA   577

0.0 Arabidopsis thaliana (ecotype Columbia) mRNA for squamosa promoter binding protein-like 4 NA coding protein psRNATarget
BX818213.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  ||||||||||||||||||||
targets:531   CUGCUCUCUCUCUUCUGUCA   550

0.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL66ZF03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BT004391.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  ||||||||||||||||||||
targets:535   CUGCUCUCUCUCUUCUGUCA   554

0.0 Arabidopsis thaliana clone U20352 putative transcription factor (At1g53160) mRNA, complete cds NA coding protein psRNATarget
NM_001332756.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:2739   GUGCUCUCUCUCUUCUGUCA   2758

0.0 Arabidopsis thaliana squamosa promoter binding protein-like 10 (SPL10), mRNA squamosa promoter binding protein-like 10(SPL10) coding protein psRNATarget
NM_102499.4
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:2630   GUGCUCUCUCUCUUCUGUCA   2649

0.0 Arabidopsis thaliana squamosa promoter binding protein-like 10 (SPL10), mRNA squamosa promoter binding protein-like 10(SPL10) coding protein psRNATarget
NM_001036019.3
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:2442   GUGCUCUCUCUCUUCUGUCA   2461

0.0 Arabidopsis thaliana squamosa promoter binding protein-like 10 (SPL10), mRNA squamosa promoter binding protein-like 10(SPL10) coding protein psRNATarget
NM_001332755.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:2372   GUGCUCUCUCUCUUCUGUCA   2391

0.0 Arabidopsis thaliana squamosa promoter binding protein-like 10 (SPL10), mRNA squamosa promoter binding protein-like 10(SPL10) coding protein psRNATarget
NM_102498.3
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:2330   GUGCUCUCUCUCUUCUGUCA   2349

0.0 Arabidopsis thaliana squamosa promoter-like 11 (SPL11), mRNA squamosa promoter-like 11(SPL11) coding protein psRNATarget
AY074853.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:2354   GUGCUCUCUCUCUUCUGUCA   2373

0.0 Arabidopsis thaliana At1g27370/F17L21_16 mRNA, complete cds NA coding protein psRNATarget
NM_001084135.2
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:2227   GUGCUCUCUCUCUUCUGUCA   2246

0.0 Arabidopsis thaliana squamosa promoter-like 11 (SPL11), mRNA squamosa promoter-like 11(SPL11) coding protein psRNATarget
NM_001084134.2
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:2123   GUGCUCUCUCUCUUCUGUCA   2142

0.0 Arabidopsis thaliana squamosa promoter-like 11 (SPL11), mRNA squamosa promoter-like 11(SPL11) coding protein psRNATarget
NM_180791.3
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1891   GUGCUCUCUCUCUUCUGUCA   1910

0.0 Arabidopsis thaliana squamosa promoter binding protein-like 2 (SPL2), mRNA squamosa promoter binding protein-like 2(SPL2) coding protein psRNATarget
NM_124435.3
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1634   GUGCUCUCUCUCUUCUGUCA   1653

0.0 Arabidopsis thaliana Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (SPL13A), mRNA Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein(SPL13A) coding protein psRNATarget
NM_203146.4
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1807   GUGCUCUCUCUCUUCUGUCA   1826

0.0 Arabidopsis thaliana squamosa promoter binding protein-like 2 (SPL2), mRNA squamosa promoter binding protein-like 2(SPL2) coding protein psRNATarget
NM_202192.2
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1507   GUGCUCUCUCUCUUCUGUCA   1526

0.0 Arabidopsis thaliana squamosa promoter binding protein-like 10 (SPL10), mRNA squamosa promoter binding protein-like 10(SPL10) coding protein psRNATarget
NM_180830.4
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1264   GUGCUCUCUCUCUUCUGUCA   1283

0.0 Arabidopsis thaliana Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (SPL13A), mRNA Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein(SPL13A) coding protein psRNATarget
NM_105584.6
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1297   GUGCUCUCUCUCUUCUGUCA   1316

0.0 Arabidopsis thaliana Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein mRNA Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein(AT1G69170) coding protein psRNATarget
NM_001344905.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1283   GUGCUCUCUCUCUUCUGUCA   1302

0.0 Arabidopsis thaliana Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (SPL13B), mRNA Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein(SPL13B) coding protein psRNATarget
NM_129782.3
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1175   GUGCUCUCUCUCUUCUGUCA   1194

0.0 Arabidopsis thaliana squamosa promoter binding protein-like 9 (SPL9), mRNA squamosa promoter binding protein-like 9(SPL9) coding protein psRNATarget
BX815862.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1267   GUGCUCUCUCUCUUCUGUCA   1286

0.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH13ZC06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_123693.6
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1256   GUGCUCUCUCUCUUCUGUCA   1275

0.0 Arabidopsis thaliana squamosa promoter binding protein-like 2 (SPL2), mRNA squamosa promoter binding protein-like 2(SPL2) coding protein psRNATarget
NM_202191.2
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1398   GUGCUCUCUCUCUUCUGUCA   1417

0.0 Arabidopsis thaliana squamosa promoter-like 11 (SPL11), mRNA squamosa promoter-like 11(SPL11) coding protein psRNATarget
NM_001084136.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1315   GUGCUCUCUCUCUUCUGUCA   1334

0.0 Arabidopsis thaliana squamosa promoter binding protein-like 10 (SPL10), mRNA squamosa promoter binding protein-like 10(SPL10) coding protein psRNATarget
AJ011625.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1165   GUGCUCUCUCUCUUCUGUCA   1184

0.0 Arabidopsis thaliana (ecotype Landsberg erecta) mRNA for squamosa promoter binding protein-like 2 NA coding protein psRNATarget
AK227964.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1122   GUGCUCUCUCUCUUCUGUCA   1141

0.0 Arabidopsis thaliana mRNA for squamosa promoter binding protein-like 6, complete cds, clone: RAFL14-51-E10 NA coding protein psRNATarget
NM_124445.4
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1264   GUGCUCUCUCUCUUCUGUCA   1283

0.0 Arabidopsis thaliana Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (SPL13B), mRNA Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein(SPL13B) coding protein psRNATarget
BT004327.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1186   GUGCUCUCUCUCUUCUGUCA   1205

0.0 Arabidopsis thaliana clone RAFL15-31-G21 (R50184) At5g43270 mRNA, complete sequence NA coding protein psRNATarget
BX816068.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1296   GUGCUCUCUCUCUUCUGUCA   1315

0.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH26ZB04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_001332754.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1193   GUGCUCUCUCUCUUCUGUCA   1212

0.0 Arabidopsis thaliana squamosa promoter binding protein-like 10 (SPL10), mRNA squamosa promoter binding protein-like 10(SPL10) coding protein psRNATarget
BX832034.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1352   GUGCUCUCUCUCUUCUGUCA   1371

0.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH47ZH02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY046007.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:937   GUGCUCUCUCUCUUCUGUCA   956

0.0 Arabidopsis thaliana putative squamosa-promoter binding protein (At2g42200) mRNA, complete cds NA coding protein psRNATarget
AY070106.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1253   GUGCUCUCUCUCUUCUGUCA   1272

0.0 Arabidopsis thaliana putative squamosa-promoter binding protein 2 (At1g27360) mRNA, complete cds NA coding protein psRNATarget
BX831680.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1103   GUGCUCUCUCUCUUCUGUCA   1122

0.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH23ZD07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AJ011643.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:979   GUGCUCUCUCUCUUCUGUCA   998

0.0 Arabidopsis thaliana (ecotype Columbia) mRNA for squamosa promoter binding protein-like 6 NA coding protein psRNATarget
AK317730.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1042   GUGCUCUCUCUCUUCUGUCA   1061

0.0 Arabidopsis thaliana AT5G50570 mRNA, complete cds, clone: RAFL25-16-N16 NA coding protein psRNATarget
AJ011626.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1063   GUGCUCUCUCUCUUCUGUCA   1082

0.0 Arabidopsis thaliana (ecotype Columbia) mRNA for squamosa promoter binding protein-like 2 NA coding protein psRNATarget
AK230160.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1149   GUGCUCUCUCUCUUCUGUCA   1168

0.0 Arabidopsis thaliana mRNA for squamosa promoter binding protein-like 2, complete cds, clone: RAFL22-87-G21 NA coding protein psRNATarget
NM_115654.3
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:845   GUGCUCUCUCUCUUCUGUCA   864

0.0 Arabidopsis thaliana squamosa promoter binding protein-like 15 (SPL15), mRNA squamosa promoter binding protein-like 15(SPL15) coding protein psRNATarget
BX818496.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1178   GUGCUCUCUCUCUUCUGUCA   1197

0.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL82ZC03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY084609.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1025   GUGCUCUCUCUCUUCUGUCA   1044

0.0 Arabidopsis thaliana clone 113229 mRNA, complete sequence NA coding protein psRNATarget
AY093106.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1073   GUGCUCUCUCUCUUCUGUCA   1092

0.0 Arabidopsis thaliana unknown protein (At5g50570) mRNA, complete cds NA coding protein psRNATarget
AJ011639.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:781   GUGCUCUCUCUCUUCUGUCA   800

0.0 Arabidopsis thaliana (ecotype Landsberg erecta) mRNA for squamosa promoter binding protein-like 9 NA coding protein psRNATarget
BX832762.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1111   GUGCUCUCUCUCUUCUGUCA   1130

0.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH9ZD01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY088185.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1195   GUGCUCUCUCUCUUCUGUCA   1214

0.0 Arabidopsis thaliana clone 42666 mRNA, complete sequence NA coding protein psRNATarget
BX815562.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1212   GUGCUCUCUCUCUUCUGUCA   1231

0.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS71ZF01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AK117475.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:968   GUGCUCUCUCUCUUCUGUCA   987

0.0 Arabidopsis thaliana At5g50670 mRNA for unknown protein, complete cds, clone: RAFL17-08-M12 NA coding protein psRNATarget
AY086384.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:785   GUGCUCUCUCUCUUCUGUCA   804

0.0 Arabidopsis thaliana clone 247919 mRNA, complete sequence NA coding protein psRNATarget
AJ011637.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1122   GUGCUCUCUCUCUUCUGUCA   1141

0.0 Arabidopsis thaliana (ecotype Columbia) mRNA for squamosa promoter binding protein-like 10 NA coding protein psRNATarget
AJ011638.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:775   GUGCUCUCUCUCUUCUGUCA   794

0.0 Arabidopsis thaliana (ecotype Columbia) mRNA for squamosa promoter binding protein-like 9 NA coding protein psRNATarget
AJ011635.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1122   GUGCUCUCUCUCUUCUGUCA   1141

0.0 Arabidopsis thaliana (ecotype Columbia) mRNA for squamosa promoter binding protein-like 11 NA coding protein psRNATarget
BT025984.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1010   GUGCUCUCUCUCUUCUGUCA   1029

0.0 Arabidopsis thaliana At5g43270 mRNA, complete cds NA coding protein psRNATarget
BT006436.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:908   GUGCUCUCUCUCUUCUGUCA   927

0.0 Arabidopsis thaliana At1g69170 gene, complete cds NA coding protein psRNATarget
AY091286.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1085   GUGCUCUCUCUCUUCUGUCA   1104

0.0 Arabidopsis thaliana putative squamosa-promoter binding protein 2 (At1g27360) mRNA, complete cds NA coding protein psRNATarget
AY142028.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:1085   GUGCUCUCUCUCUUCUGUCA   1104

0.0 Arabidopsis thaliana At1g27370/F17L21_16 mRNA, complete cds NA coding protein psRNATarget
AF370612.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:875   GUGCUCUCUCUCUUCUGUCA   894

0.0 Arabidopsis thaliana similar to squamosa-promoter binding protein 1 isolog gi|1707009 (F4N2.13) mRNA, complete cds NA coding protein psRNATarget
AY150378.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:743   GUGCUCUCUCUCUUCUGUCA   762

0.0 Arabidopsis thaliana putative squamosa-promoter binding protein (At2g42200) mRNA, complete cds NA coding protein psRNATarget
AJ628864.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:743   GUGCUCUCUCUCUUCUGUCA   762

0.0 Arabidopsis thaliana mRNA for putative squamosa-promoter binding protein (At2g42200 gene) NA coding protein psRNATarget
AY128816.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||||||||||
targets:332   GUGCUCUCUCUCUUCUGUCA   351

0.0 Arabidopsis thaliana unknown protein (At5g50570) mRNA, complete cds NA coding protein psRNATarget
NM_112390.5
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  |*||||||||||||||||||
targets:1620   CCGCUCUCUCUCUUCUGUCA   1639

1.0 Arabidopsis thaliana squamosa promoter binding protein-like 5 (SPL5), mRNA squamosa promoter binding protein-like 5(SPL5) coding protein psRNATarget
AK118611.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  |*||||||||||||||||||
targets:680   CCGCUCUCUCUCUUCUGUCA   699

1.0 Arabidopsis thaliana At3g15270 mRNA for squamosa promoter binding protein-like 5, putative, complete cds, clone: RAFL19-86-N19 NA coding protein psRNATarget
AJ011610.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  |*||||||||||||||||||
targets:633   CCGCUCUCUCUCUUCUGUCA   652

1.0 Arabidopsis thaliana (ecotype Landsberg erecta) mRNA for squamosa promoter binding protein-like 5 NA coding protein psRNATarget
AJ242960.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  |*||||||||||||||||||
targets:633   CCGCUCUCUCUCUUCUGUCA   652

1.0 Arabidopsis thaliana mRNA for Squamosa promoter binding protein-like 5, (SPL5 gene) NA coding protein psRNATarget
BX817163.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  *|||||||||||*|||||||
targets:1400   GUGCUCUCUCUCCUCUGUCA   1419

1.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH8ZF10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_128940.2
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  =||||=*|||||||||||||
targets:787   UUGCUUACUCUCUUCUGUCA   806

2.0 Arabidopsis thaliana squamosa promoter binding protein-like 3 (SPL3), mRNA squamosa promoter binding protein-like 3(SPL3) coding protein psRNATarget
AK118179.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  =||||=*|||||||||||||
targets:564   UUGCUUACUCUCUUCUGUCA   583

2.0 Arabidopsis thaliana At2g33810 mRNA for putative squamosa-promoter binding protein, complete cds, clone: RAFL19-50-A02 NA coding protein psRNATarget
AY084312.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  =||||=*|||||||||||||
targets:520   UUGCUUACUCUCUUCUGUCA   539

2.0 Arabidopsis thaliana clone 10375 mRNA, complete sequence NA coding protein psRNATarget
AJ011633.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  =||||=*|||||||||||||
targets:470   UUGCUUACUCUCUUCUGUCA   489

2.0 Arabidopsis thaliana (ecotype Landsberg erecta) mRNA for squamosa promoter binding protein-like 3 NA coding protein psRNATarget
Y09427.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  =||||=*|||||||||||||
targets:470   UUGCUUACUCUCUUCUGUCA   489

2.0 A.thaliana mRNA for squamosa-promoter binding protein like 3 NA coding protein psRNATarget
AJ242959.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  =||||=*|||||||||||||
targets:470   UUGCUUACUCUCUUCUGUCA   489

2.0 Arabidopsis thaliana mRNA for Squamosa promoter binding protein-like 3 (SPL3 gene) NA coding protein psRNATarget
NM_105809.4
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  ||||*||||||=||||||||
targets:2293   CUGCACUCUCUUUUCUGUCA   2312

2.5 Arabidopsis thaliana receptor like protein 12 (RLP12), mRNA receptor like protein 12(RLP12) coding protein psRNATarget
BX816228.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  ||||*||||||=||||||||
targets:328   CUGCACUCUCUUUUCUGUCA   347

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH35ZH09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_127276.3
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  ||*|||||||||||||*|||
targets:43   CUUCUCUCUCUCUUCUCUCA   62

2.5 Arabidopsis thaliana Protein kinase superfamily protein (Kin3), mRNA Protein kinase superfamily protein(Kin3) coding protein psRNATarget
AK227994.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  ||*|||||||||||||*|||
targets:718   CUUCUCUCUCUCUUCUCUCA   737

2.5 Arabidopsis thaliana mRNA for putative transcription factor, complete cds, clone: RAFL14-52-M09 NA coding protein psRNATarget
NM_201749.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  ||*|||||||||||||*|||
targets:20   CUUCUCUCUCUCUUCUCUCA   39

2.5 Arabidopsis thaliana Protein kinase superfamily protein (Kin3), mRNA Protein kinase superfamily protein(Kin3) coding protein psRNATarget
AY049263.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  ||*|||||||||||||*|||
targets:11   CUUCUCUCUCUCUUCUCUCA   30

2.5 Arabidopsis thaliana At2g17220/T23A1.8 mRNA, complete cds NA coding protein psRNATarget
BX819921.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  ||*|||||||||||||*|||
targets:20   CUUCUCUCUCUCUUCUCUCA   39

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS4ZA01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AK176356.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  ||*|||||||||||||*|||
targets:42   CUUCUCUCUCUCUUCUCUCA   61

2.5 Arabidopsis thaliana mRNA, complete cds, clone: RAFL24-05-N05 NA coding protein psRNATarget
BX815522.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  ||*|||||||||||||*|||
targets:30   CUUCUCUCUCUCUUCUCUCA   49

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS6ZB04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_001084198.2
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  ||*|||||||||||||*|||
targets:244   CUUCUCUCUCUCUUCUCUCA   263

2.5 Arabidopsis thaliana myb-like transcription factor family protein mRNA myb-like transcription factor family protein(AT1G35516) coding protein psRNATarget
NM_001333159.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  ||*|||||||||||||*|||
targets:244   CUUCUCUCUCUCUUCUCUCA   263

2.5 Arabidopsis thaliana myb-like transcription factor family protein mRNA myb-like transcription factor family protein(AT1G35516) coding protein psRNATarget
AK175530.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  ||*|||||||||||||*|||
targets:42   CUUCUCUCUCUCUUCUCUCA   61

2.5 Arabidopsis thaliana mRNA, complete cds, clone: RAFL21-94-N12 NA coding protein psRNATarget
AK228111.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  ||*|||||||||||||*|||
targets:41   CUUCUCUCUCUCUUCUCUCA   60

2.5 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-59-B19 NA coding protein psRNATarget
AK175250.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  ||*|||||||||||||*|||
targets:42   CUUCUCUCUCUCUUCUCUCA   61

2.5 Arabidopsis thaliana mRNA, complete cds, clone: RAFL21-68-G19 NA coding protein psRNATarget
AK176223.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  ||*|||||||||||||*|||
targets:41   CUUCUCUCUCUCUUCUCUCA   60

2.5 Arabidopsis thaliana mRNA, complete cds, clone: RAFL23-11-E01 NA coding protein psRNATarget
AK175853.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  ||*|||||||||||||*|||
targets:39   CUUCUCUCUCUCUUCUCUCA   58

2.5 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-47-E19 NA coding protein psRNATarget
AK176103.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  ||*|||||||||||||*|||
targets:39   CUUCUCUCUCUCUUCUCUCA   58

2.5 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-88-L24 NA coding protein psRNATarget
AK176102.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  ||*|||||||||||||*|||
targets:39   CUUCUCUCUCUCUUCUCUCA   58

2.5 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-88-L14 NA coding protein psRNATarget
AK176055.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  ||*|||||||||||||*|||
targets:39   CUUCUCUCUCUCUUCUCUCA   58

2.5 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-80-A02 NA coding protein psRNATarget
AK175331.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  ||*|||||||||||||*|||
targets:36   CUUCUCUCUCUCUUCUCUCA   55

2.5 Arabidopsis thaliana mRNA, complete cds, clone: RAFL21-77-I05 NA coding protein psRNATarget
BX817898.1
ncRNA:20   GACGAGAGAGAGAAGACAGU   1
  ||*|||||||||||||*|||
targets:21   CUUCUCUCUCUCUUCUCUCA   40

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL48ZB02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget

Reference

1 PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis";
Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN;
Genome Res. 22:163-176(2012).
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