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BaseInfo

ncRNA ID	novel_ath_miR690
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr4:10271007-10271213 [+]
Reference genome	TAIR10
Source	SRR3954849
Length	22
Mature sequence(if miRNA)	186 - UUAAACUCUUUUAAAAUCUCUU - 207
Stem-loop(if miRNA)	--                  UACAAU     A             -   C                AG     GU         UAAAU     AAA    UU  G   GGGAUUUUAAAAGGGUUU      AUUUA AAGGGAUUUUAAA GGG UUUAAAAGAUUUACAA  GAUUU  AAAGAUUUU     GGUUU   AGUG  UU A   ||||||||||||||||||      ||||| ||||||||||||| ||| ||||||||||||||||  |||||  |||||||||     |||||   ||||  ||   CUCUAAAAUUUUCUCAAA      UAAAU UUUCCUAAAAUUU CCC AAAUUUUUUAAAUGUU  UUAAA  UUUCUAAAA     UUAGG   UUAU  AG A UU                  UUUUUC     G             U   A                CA     AU         ---UU     -GA    UU  A
Stem-loop sequence	GGGAUUUUAAAAGGGUUUUACAAUAUUUAAAAGGGAUUUUAAAGGGCUUUAAAAGAUUUACAAAGGAUUUGUAAAGAUUUUUAAAUGGUUUAAAAGUGUUUUGAAAGAUUUAUUAGGGAUUUUAAAAUCUUUUAAAAUUACUUGUAAAUUUUUUAAAACCCUUUUAAAAUCCUUUGUAAAUCUUUUUAAACUCUUUUAAAAUCUCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_102090.5	ncRNA:22   UUCUCUAAAAUUUUCUCAAAUU   1   *|||||*|||*||||||||||| targets:696   CAGAGAGUUUCAAAGAGUUUAA   717 Target Full Sequence	2.5	Arabidopsis thaliana Class-II DAHP synthetase family protein mRNA	Class-II DAHP synthetase family protein(AT1G22410)	coding protein	psRNATarget
NM_128918.5	ncRNA:22   UUCUCUAAAAUUUUCUCAAAUU   1   =|||||**|||||||||||||* targets:2187   GAGAGAAGUUAAAAGAGUUUAU   2208 Target Full Sequence	3.0	Arabidopsis thaliana Protein kinase superfamily protein (LYK5), mRNA	Protein kinase superfamily protein(LYK5)	coding protein	psRNATarget
BX820436.1	ncRNA:22   UUCUCUAAAAUUUUCUCAAAUU   1   =|||||**|||||||||||||* targets:1794   GAGAGAAGUUAAAAGAGUUUAU   1815 Target Full Sequence	3.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH32ZG08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AF370600.1	ncRNA:22   UUCUCUAAAAUUUUCUCAAAUU   1   =|||||**|||||||||||||* targets:1775   GAGAGAAGUUAAAAGAGUUUAU   1796 Target Full Sequence	3.0	Arabidopsis thaliana putative protein kinase (At2g33580; F4P9.35) mRNA, complete cds	NA	coding protein	psRNATarget
BT046191.1	ncRNA:22   UUCUCUAAAAUUUUCUCAAAUU   1   =|||||**|||||||||||||* targets:1775   GAGAGAAGUUAAAAGAGUUUAU   1796 Target Full Sequence	3.0	Arabidopsis thaliana unknown protein (At2g33580) mRNA, complete cds	NA	coding protein	psRNATarget