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BaseInfo

ncRNA ID novel_ath_miR689
Species Arabidopsis thaliana
Class miRNA
Genome position Chr5:11384525-11384632 [+]
Reference genome TAIR10
Source SRR3707800
Length 22
Mature sequence(if miRNA) 1 - UUUGAAAAAAACUUUUGGCGGG - 22
Stem-loop(if miRNA) --  UG   A   C    G  G    AUU       - G        UGG      U
  UU  AAA AAA UUUU GC GGAA   UGUUUUU C AAAAGAUU   CGAGAA U
  ||  ||| ||| |||| || ||||   ||||||| | ||||||||   ||||||
  AG  UUU UUU AAGG CG UUUU   ACAAGGG G UUUUUUAA   GCUUUU U
UA  GU   A   A    G  G    ---       C G        --A      U
Stem-loop sequence UUUGAAAAAAACUUUUGGCGGGAAAUUUGUUUUUCGAAAAGAUUUGGCGAGAAUUUUUUUUCGAAAUUUUUUGGCGGGAACAUUUUGGCGGGAAAUUUAUUUUGGAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BX832756.1
ncRNA:22   GGGCGGUUUUCAAAAAAAGUUU   1
  |=*||*||||||||||||=|||
targets:182   CUAGCAAAAAGUUUUUUUUAAA   203

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH9ZA07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget