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BaseInfo

ncRNA ID novel_ath_miR688
Species Arabidopsis thaliana
Class miRNA
Genome position Chr3:14810723-14810785 [-]
Reference genome TAIR10
Source SRR3707800;ERR1297303;ERR1297304;SRR1266859
Length 24
Mature sequence(if miRNA) 1 - AUUGUUGAUCUUUGUUUUGUGACA - 24
Stem-loop(if miRNA) --  UU            A     A C     
  UC  UAAAGCGGAGAU AAUAA G AAAUAA
  ||  |||||||||||| ||||| | |||||A
  AG  GUUUUGUUUCUA UUGUU C UUUAUU
AC  -U            G     A -     
Stem-loop sequence UCUUUAAAGCGGAGAUAAAUAAAGCAAAUAAAUUAUUUCAUUGUUGAUCUUUGUUUUGUGACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_117921.1
ncRNA:24   ACAGUGUUUUGUUUCUAGUUGUUA   1
  ||||-|||=*|||||||||||||*
targets:254   UGUC-CAAGUCAAAGAUCAACAAG   276

3.0 Arabidopsis thaliana RING/U-box superfamily protein partial mRNA RING/U-box superfamily protein(AT4G18110) coding protein psRNATarget