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BaseInfo

ncRNA ID novel_ath_miR686
Species Arabidopsis thaliana
Class miRNA
Genome position Chr2:2771318-2771392 [+]
Reference genome TAIR10
Source SRR3707799
Length 23
Mature sequence(if miRNA) 1 - CGACUGAGCUCGGUGAGCUGAUC - 23
Stem-loop(if miRNA) -- G   G      -   --          GU   G    A
  C ACU AGCUCG GUG  AGCUGAUCGA  ACU ACCC G
  | ||| |||||| |||  ||||||||||  ||| ||||
  G UGG UCGAGC CAC  UCGACUGGCU  UGG UGGG U
CA G   -      U   AG          --   -    U
Stem-loop sequence CGACUGAGCUCGGUGAGCUGAUCGAGUACUGACCCAGUUGGGUGGUUCGGUCAGCUGACACUCGAGCUGGUGGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_116946.1
ncRNA:23   CUAGUCGAGUGGCUCGAGUCAGC   1
  |||=|||||||||||||||||||
targets:1518   GAUUAGCUCACCGAGCUCAGUCG   1540

0.0 Arabidopsis thaliana hypothetical protein partial mRNA hypothetical protein(AT4G08760) coding protein psRNATarget