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BaseInfo

ncRNA ID novel_ath_miR681
Species Arabidopsis thaliana
Class miRNA
Genome position Chr4:3039823-3039990 [-]
Reference genome TAIR10
Source SRR3707799
Length 24
Mature sequence(if miRNA) 1 - GACUCCAAAACACUAACCAGGCUU - 24
Stem-loop(if miRNA) --                                    A    C G       GA         AAC  U     -U    C  U
  GCUUGGUUAGUGUUUUGGAGUUAAAUAUGACUAGAU UCAU U UAUGAUU  GUAUAAGGA   AG ACUAC  UUAG UU U
  |||||||||||||||||||||||||||||||||||| |||| | |||||||  |||||||||   || |||||  |||| ||
  CGGACCAAUCACAAAACCUCAGUUUAUACUGAUCUA AGUA A AUACUAA  UAUAUUCUU   UC UGGUG  AAUC AG A
UU                                    C    C G       GA         -GA  U     UU    A  G
Stem-loop sequence GCUUGGUUAGUGUUUUGGAGUUAAAUAUGACUAGAUAUCAUCUGUAUGAUUGAGUAUAAGGAAACAGUACUACUUUAGCUUUUAGGAACUAAUUGUGGUUCUAGUUCUUAUAUAGAAUCAUAGACAUGACAUCUAGUCAUAUUUGACUCCAAAACACUAACCAGGCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_179610.1
ncRNA:24   UUCGGACC-AAUCACAAAACCUCAG   1
  |||*=|||-|||||||||||||||*
targets:640   AAGGUUGGCUUAGUGUUUUGGAGUG   664

3.0 Arabidopsis thaliana hypothetical protein partial mRNA hypothetical protein(AT2G07981) coding protein psRNATarget