ncRNA ID | novel_ath_miR681 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | Chr4:3039823-3039990 [-] |
Reference genome | TAIR10 |
Source | SRR3707799 |
Length | 24 |
Mature sequence(if miRNA) | 1 - GACUCCAAAACACUAACCAGGCUU - 24 |
Stem-loop(if miRNA) |
--                                    A    C G       GA         AAC  U     -U    C  U   GCUUGGUUAGUGUUUUGGAGUUAAAUAUGACUAGAU UCAU U UAUGAUU  GUAUAAGGA   AG ACUAC  UUAG UU U   |||||||||||||||||||||||||||||||||||| |||| | |||||||  |||||||||   || |||||  |||| ||   CGGACCAAUCACAAAACCUCAGUUUAUACUGAUCUA AGUA A AUACUAA  UAUAUUCUU   UC UGGUG  AAUC AG A UU                                    C    C G       GA         -GA  U     UU    A  G |
Stem-loop sequence | GCUUGGUUAGUGUUUUGGAGUUAAAUAUGACUAGAUAUCAUCUGUAUGAUUGAGUAUAAGGAAACAGUACUACUUUAGCUUUUAGGAACUAAUUGUGGUUCUAGUUCUUAUAUAGAAUCAUAGACAUGACAUCUAGUCAUAUUUGACUCCAAAACACUAACCAGGCUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_179610.1 |
|
3.0 | Arabidopsis thaliana hypothetical protein partial mRNA | hypothetical protein(AT2G07981) | coding protein | psRNATarget |