ncRNA ID | novel_ath_miR678 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | Chr2:12531210-12531286 [+] |
Reference genome | TAIR10 |
Source | SRR3707798 |
Length | 19 |
Mature sequence(if miRNA) | 59 - CAUGGAGAUUGGAUUUUGA - 77 |
Stem-loop(if miRNA) |
--AUC   UG   A UG   -   GG   U     UUUU      AUC  AUC U  UGU UUA  GUU UUUUU    U      |||  ||| |  ||| |||  ||| |||||      UAG  UAG G  ACA AAU  CAG AAAAG    U AGUUU   GU   A GU   U   GA   C     UUAA |
Stem-loop sequence | AUCAUCUGAUCAUUGUGUUUAGGGUUUUUUUUUUUUUUAAUUGAAAACGACAGUAAUACAUGGAGAUUGGAUUUUGA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK229323.1 |
|
2.5 | Arabidopsis thaliana mRNA for putative jasmonate inducible protein, complete cds, clone: RAFL16-58-D03 | NA | coding protein | psRNATarget | |||||||||
NM_001344026.1 |
|
2.5 | Arabidopsis thaliana Trypsin family protein with PDZ domain-containing protein (DEG14), mRNA | Trypsin family protein with PDZ domain-containing protein(DEG14) | coding protein | psRNATarget |