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BaseInfo

ncRNA ID novel_ath_miR678
Species Arabidopsis thaliana
Class miRNA
Genome position Chr2:12531210-12531286 [+]
Reference genome TAIR10
Source SRR3707798
Length 19
Mature sequence(if miRNA) 59 - CAUGGAGAUUGGAUUUUGA - 77
Stem-loop(if miRNA) --AUC   UG   A UG   -   GG   U     UUUU
     AUC  AUC U  UGU UUA  GUU UUUUU    U
     |||  ||| |  ||| |||  ||| |||||
     UAG  UAG G  ACA AAU  CAG AAAAG    U
AGUUU   GU   A GU   U   GA   C     UUAA
Stem-loop sequence AUCAUCUGAUCAUUGUGUUUAGGGUUUUUUUUUUUUUUAAUUGAAAACGACAGUAAUACAUGGAGAUUGGAUUUUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK229323.1
ncRNA:19   AGUUUUAGGUUAGAGGUAC   1
  |||*||||||||*||||||
targets:1822   UCACAAUCCAAUAUCCAUG   1840

2.5 Arabidopsis thaliana mRNA for putative jasmonate inducible protein, complete cds, clone: RAFL16-58-D03 NA coding protein psRNATarget
NM_001344026.1
ncRNA:19   AGUUUUAGGUUAGAGGUAC   1
  |||*||||||||*||||||
targets:1810   UCACAAUCCAAUAUCCAUG   1828

2.5 Arabidopsis thaliana Trypsin family protein with PDZ domain-containing protein (DEG14), mRNA Trypsin family protein with PDZ domain-containing protein(DEG14) coding protein psRNATarget