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BaseInfo

ncRNA ID novel_ath_miR675
Species Arabidopsis thaliana
Class miRNA
Genome position Chr5:9776815-9776884 [-]
Reference genome TAIR10
Source SRR3707798;SRR3707799
Length 21
Mature sequence(if miRNA) 50 - AUCUUAGAGAAUGCCAUUAUG - 70
Stem-loop(if miRNA) --                     A  UCU  -   C
  AUCUUAGAGAAUGCCAUUAUG GG   GC GAU U
  ||||||||||||||||||||| ||   || |||
  UAGAAUCUCUUACGGUAAUAC CU   UG CUA C
AG                     -  UUC  U   G
Stem-loop sequence AUCUUAGAGAAUGCCAUUAUGAGGUCUGCGAUCUCGAUCUGUCUUUCCAUAAUGGCAUUCUCUAAGAUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK226316.1
ncRNA:21   GUAUUACCGUAAGAGAUUCUA   1
  *|*|=*|||||||||||||||
targets:1731   GAGAGAGGCAUUCUCUAAGAU   1751

3.0 Arabidopsis thaliana mRNA for chloroplast single subunit DNA-dependent RNA polymerase, partial cds, clone: RAFL05-13-A02 NA coding protein psRNATarget
AK229652.1
ncRNA:21   GUAUUACCGUAAGAGAUUCUA   1
  *|*|=*|||||||||||||||
targets:1636   GAGAGAGGCAUUCUCUAAGAU   1656

3.0 Arabidopsis thaliana mRNA for chloroplast single subunit DNA-dependent RNA polymerase, complete cds, clone: RAFL19-74-C03 NA coding protein psRNATarget
Y08463.1
ncRNA:21   GUAUUACCGUAAGAGAUUCUA   1
  *|*|=*|||||||||||||||
targets:1677   GAGAGAGGCAUUCUCUAAGAU   1697

3.0 Arabidopsis thaliana mRNA for chloroplast single-subunit DNA-dependent RNA polymerase NA coding protein psRNATarget
NM_127973.5
ncRNA:21   GUAUUACCGUAAGAGAUUCUA   1
  *|*|=*|||||||||||||||
targets:1730   GAGAGAGGCAUUCUCUAAGAU   1750

3.0 Arabidopsis thaliana DNA/RNA polymerases superfamily protein (SCA3), mRNA DNA/RNA polymerases superfamily protein(SCA3) coding protein psRNATarget
NM_201796.2
ncRNA:21   GUAUUACCGUAAGAGAUUCUA   1
  *|*|=*|||||||||||||||
targets:1730   GAGAGAGGCAUUCUCUAAGAU   1750

3.0 Arabidopsis thaliana DNA/RNA polymerases superfamily protein (SCA3), mRNA DNA/RNA polymerases superfamily protein(SCA3) coding protein psRNATarget
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