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BaseInfo

ncRNA ID novel_ath_miR672
Species Arabidopsis thaliana
Class miRNA
Genome position Chr3:22650738-22650794 [-]
Reference genome TAIR10
Source SRR3707798
Length 21
Mature sequence(if miRNA) 1 - UUGAGGAACAAAGAUGUGUGA - 21
Stem-loop(if miRNA) --CUU            A   AUU    CA
     CGUCUUUGUUCC UAG   UUCC  A
     |||||||||||| |||   ||||
     GUAGAAACAAGG GUU   AAGG  U
AGUGU            A   ---    UU
Stem-loop sequence CUUCGUCUUUGUUCCAUAGAUUUUCCCAAUUUGGAAUUGAGGAACAAAGAUGUGUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_124476.3
ncRNA:21   AGUGUGUAGAAACAAGGAGUU   1
  |||||==|||||||||||||*
targets:1704   UCACAUGUCUUUGUUCCUCAU   1724

3.0 Arabidopsis thaliana transducin family protein / WD-40 repeat family protein mRNA transducin family protein / WD-40 repeat family protein(AT5G50970) coding protein psRNATarget
BT002953.1
ncRNA:21   AGUGUGUAGAAACAAGGAGUU   1
  |||||==|||||||||||||*
targets:1680   UCACAUGUCUUUGUUCCUCAU   1700

3.0 Arabidopsis thaliana clone RAFL14-83-D16 (R20328) unknown protein (At5g50970) mRNA, complete cds NA coding protein psRNATarget
AK175154.1
ncRNA:21   AGUGUGUAGAAACAAGGAGUU   1
  |||||==|||||||||||||*
targets:1592   UCACAUGUCUUUGUUCCUCAU   1612

3.0 Arabidopsis thaliana mRNA, complete cds, clone: RAFL21-57-G12 NA coding protein psRNATarget