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BaseInfo

ncRNA ID	novel_ath_miR629
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr1:13706737-13706912 [-]
Reference genome	TAIR10
Source	SRR3707793
Length	19
Mature sequence(if miRNA)	1 - GACAAUGGUCACCGGCGGU - 19
Stem-loop(if miRNA)	-UG -    G   --- G C    UG UG  UG AG -    G  -G   GGAGGUGAUGAUGGUCGGUGUUGGUGGUGGUCGAUGGUGGUGGCC    G UGGU GCC   G U UUGG  G  GC  G  U UGAU GU  GUC                                             G    | |||| |||   | | ||||  |  ||  |  | |||| ||  |||                                             C    C GCCA CUG   A C AGCC  G  UA  U  G UGGU UG  GCU                                             G UGG G    -   GUA - -    -- -G  -G -- G    -  AG   GGUGGUGGUGGUAGCCGGCAGUGGUGGCAGCCUGUGAUGGUGGCG
Stem-loop sequence	UGGUGGUGGCCGGUCUUGGUGGUGGCUGGAGUUGAUGGUGGUCGGAGGUGAUGAUGGUCGGUGUUGGUGGUGGUCGAUGGUGGUGGCCGCGGCGGUGGUAGUGUCCGACGGUGGUGACGGCCGAUGGUGGUGGUGGUCGGAGUUGGUGGUGAUGGCCGACAAUGGUCACCGGCGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_122030.4	ncRNA:19   UGGCGGCCACUGGUAACAG   1   ||||=|||||||||||||| targets:583   ACCGUCGGUGACCAUUGUC   601 Target Full Sequence	1.0	Arabidopsis thaliana blue-copper-binding protein (BCB), mRNA	blue-copper-binding protein(BCB)	coding protein	psRNATarget
BX830782.1	ncRNA:19   UGGCGGCCACUGGUAACAG   1   ||||=|||||||||||||| targets:620   ACCGUCGGUGACCAUUGUC   638 Target Full Sequence	1.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS22ZC02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AY034986.1	ncRNA:19   UGGCGGCCACUGGUAACAG   1   ||||=|||||||||||||| targets:436   ACCGUCGGUGACCAUUGUC   454 Target Full Sequence	1.0	Arabidopsis thaliana putative blue copper binding protein (At5g20230) mRNA, complete cds	NA	coding protein	psRNATarget
AY052681.1	ncRNA:19   UGGCGGCCACUGGUAACAG   1   ||||=|||||||||||||| targets:436   ACCGUCGGUGACCAUUGUC   454 Target Full Sequence	1.0	Arabidopsis thaliana AT5g20230/F5O24_120 mRNA, complete cds	NA	coding protein	psRNATarget
BX832848.1	ncRNA:19   UGGCGGCCACUGGUAACAG   1   ||||=|||||||||||||| targets:432   ACCGUCGGUGACCAUUGUC   450 Target Full Sequence	1.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL17ZD12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AY088549.1	ncRNA:19   UGGCGGCCACUGGUAACAG   1   ||||=|||||||||||||| targets:442   ACCGUCGGUGACCAUUGUC   460 Target Full Sequence	1.0	Arabidopsis thaliana clone 7767 mRNA, complete sequence	NA	coding protein	psRNATarget
Y18227.1	ncRNA:19   UGGCGGCCACUGGUAACAG   1   ||||=|||||||||||||| targets:341   ACCGUCGGUGACCAUUGUC   359 Target Full Sequence	1.0	Arabidopsis thaliana mRNA for blue copper binding-like protein	NA	coding protein	psRNATarget
AY142577.1	ncRNA:19   UGGCGGCCACUGGUAACAG   1   ||||=|||||||||||||| targets:322   ACCGUCGGUGACCAUUGUC   340 Target Full Sequence	1.0	Arabidopsis thaliana putative blue copper binding protein (At5g20230) mRNA, complete cds	NA	coding protein	psRNATarget