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BaseInfo

ncRNA ID	novel_ath_miR628
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr4:12935536-12935600 [+]
Reference genome	TAIR10
Source	SRR3707793
Length	20
Mature sequence(if miRNA)	1 - GCCUGAUCUUGUAGCUCAUU - 20
Stem-loop(if miRNA)	--   -   U    U       U    UA A       GCC UGA CUUG AGCUCAU UGGU  G GGGCU   ||| ||| |||| ||||||| ||||  | ||||A   CGG ACU GAAC UUGGGUA ACCA  C CUCGA GA   U   -    -       C    -- -
Stem-loop sequence	GCCUGAUCUUGUAGCUCAUUUGGUUAGAGGGCUAAGCUCCACCACAUGGGUUCAAGUCAUGGCAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT030370.1	ncRNA:20   UUACUCGAUGUUCUAGUCCG   1   =||||||||||||||*|||| targets:526   GAUGAGCUACAAGAUGAGGC   545 Target Full Sequence	1.5	Arabidopsis thaliana At5g41100 mRNA, complete cds	NA	coding protein	psRNATarget
BX831683.1	ncRNA:20   UUACUCGAUGUUCUAGUCCG   1   =||||||||||||||*|||| targets:730   GAUGAGCUACAAGAUGAGGC   749 Target Full Sequence	1.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH23ZE07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AK316986.1	ncRNA:20   UUACUCGAUGUUCUAGUCCG   1   =||||||||||||||*|||| targets:734   GAUGAGCUACAAGAUGAGGC   753 Target Full Sequence	1.5	Arabidopsis thaliana AT5G41100 mRNA, complete cds, clone: RAFL19-25-B20	NA	coding protein	psRNATarget
AK118189.1	ncRNA:20   UUACUCGAUGUUCUAGUCCG   1   =||||||||||||||*|||| targets:733   GAUGAGCUACAAGAUGAGGC   752 Target Full Sequence	1.5	Arabidopsis thaliana At5g41100 mRNA for unknown protein, complete cds, clone: RAFL19-51-C06	NA	coding protein	psRNATarget
NM_123475.3	ncRNA:20   UUACUCGAUGUUCUAGUCCG   1   =||||||||||||||*|||| targets:770   GAUGAGCUACAAGAUGAGGC   789 Target Full Sequence	1.5	Arabidopsis thaliana hydroxyproline-rich glycoprotein family protein mRNA	hydroxyproline-rich glycoprotein family protein(AT5G41100)	coding protein	psRNATarget
NM_180781.2	ncRNA:20   UUACUCGAUGUUCUAGUCCG   1   =||||||||||||||*|||| targets:770   GAUGAGCUACAAGAUGAGGC   789 Target Full Sequence	1.5	Arabidopsis thaliana hydroxyproline-rich glycoprotein family protein mRNA	hydroxyproline-rich glycoprotein family protein(AT5G41100)	coding protein	psRNATarget
BT002271.1	ncRNA:20   UUACUC-GAUGUUCUAGUCCG   1   ||||=|-|||||||||||||| targets:750   AAUGGGACUACAAGAUCAGGC   770 Target Full Sequence	3.0	Arabidopsis thaliana At5g06530/F15M7_6 mRNA, complete cds	NA	coding protein	psRNATarget
AY114068.1	ncRNA:20   UUACUC-GAUGUUCUAGUCCG   1   ||||=|-|||||||||||||| targets:1629   AAUGGGACUACAAGAUCAGGC   1649 Target Full Sequence	3.0	Arabidopsis thaliana putative ABC transporter protein (At5g06530) mRNA, complete cds	NA	coding protein	psRNATarget
AY059787.1	ncRNA:20   UUACUC-GAUGUUCUAGUCCG   1   ||||=|-|||||||||||||| targets:1738   AAUGGGACUACAAGAUCAGGC   1758 Target Full Sequence	3.0	Arabidopsis thaliana putative ABC transporter protein (At5g06530) mRNA, complete cds	NA	coding protein	psRNATarget
AF389289.1	ncRNA:20   UUACUC-GAUGUUCUAGUCCG   1   ||||=|-|||||||||||||| targets:1742   AAUGGGACUACAAGAUCAGGC   1762 Target Full Sequence	3.0	Arabidopsis thaliana AT5g06530/F15M7_6 mRNA, complete cds	NA	coding protein	psRNATarget
AK317422.1	ncRNA:20   UUACUC-GAUGUUCUAGUCCG   1   ||||=|-|||||||||||||| targets:1864   AAUGGGACUACAAGAUCAGGC   1884 Target Full Sequence	3.0	Arabidopsis thaliana AT5G06530 mRNA, complete cds, clone: RAFL24-03-O13	NA	coding protein	psRNATarget
NM_180450.2	ncRNA:20   UUACUC-GAUGUUCUAGUCCG   1   ||||=|-|||||||||||||| targets:1848   AAUGGGACUACAAGAUCAGGC   1868 Target Full Sequence	3.0	Arabidopsis thaliana ABC-2 type transporter family protein (ABCG22), mRNA	ABC-2 type transporter family protein(ABCG22)	coding protein	psRNATarget
NM_120736.3	ncRNA:20   UUACUC-GAUGUUCUAGUCCG   1   ||||=|-|||||||||||||| targets:1793   AAUGGGACUACAAGAUCAGGC   1813 Target Full Sequence	3.0	Arabidopsis thaliana ABC-2 type transporter family protein (ABCG22), mRNA	ABC-2 type transporter family protein(ABCG22)	coding protein	psRNATarget
NM_001036766.2	ncRNA:20   UUACUC-GAUGUUCUAGUCCG   1   ||||=|-|||||||||||||| targets:1861   AAUGGGACUACAAGAUCAGGC   1881 Target Full Sequence	3.0	Arabidopsis thaliana ABC-2 type transporter family protein (ABCG22), mRNA	ABC-2 type transporter family protein(ABCG22)	coding protein	psRNATarget
NM_001342884.1	ncRNA:20   UUACUC-GAUGUUCUAGUCCG   1   ||||=|-|||||||||||||| targets:2069   AAUGGGACUACAAGAUCAGGC   2089 Target Full Sequence	3.0	Arabidopsis thaliana ABC-2 type transporter family protein (ABCG22), mRNA	ABC-2 type transporter family protein(ABCG22)	coding protein	psRNATarget