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BaseInfo

ncRNA ID	novel_ath_miR617
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr4:5177828-5177910 [+]
Reference genome	TAIR10
Source	SRR3707791
Length	24
Mature sequence(if miRNA)	60 - AAAACUCUUGUACAUCUUUUAAAA - 83
Stem-loop(if miRNA)	-UUA       U                 GG   UCUUAUA     AAAAGAU UACAAGAGUUUUUAAAG  UUU       A     ||||||| |||||||||||||||||  |||     UUUUCUA AUGUUCUCAAAAAUUUC  AAA       U AAAA       C                 UA   UUUUCUU
Stem-loop sequence	UUAAAAAGAUUUACAAGAGUUUUUAAAGGGUUUUCUUAUAAUUUCUUUUAAAAUCUUUAAAAACUCUUGUACAUCUUUUAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001335458.1	ncRNA:24   AAAAUUUUCUACAUGUUCUCAAAA   1   ***||=|*|||||||||||||||* targets:1263   AACUAGACGAUGUACAAGAGUUUC   1286 Target Full Sequence	3.0	Arabidopsis thaliana P-loop containing nucleoside triphosphate hydrolases superfamily protein mRNA	P-loop containing nucleoside triphosphate hydrolases superfamily protein(AT2G15730)	coding protein	psRNATarget
NM_127135.4	ncRNA:24   AAAAUUUUCUACAUGUUCUCAAAA   1   ***||=|*|||||||||||||||* targets:1208   AACUAGACGAUGUACAAGAGUUUC   1231 Target Full Sequence	3.0	Arabidopsis thaliana P-loop containing nucleoside triphosphate hydrolases superfamily protein mRNA	P-loop containing nucleoside triphosphate hydrolases superfamily protein(AT2G15730)	coding protein	psRNATarget
BX819298.1	ncRNA:24   AAAAUUUUCUACAUGUUCUCAAAA   1   ***||=|*|||||||||||||||* targets:1104   AACUAGACGAUGUACAAGAGUUUC   1127 Target Full Sequence	3.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB65ZG11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_001335459.1	ncRNA:24   AAAAUUUUCUACAUGUUCUCAAAA   1   ***||=|*|||||||||||||||* targets:942   AACUAGACGAUGUACAAGAGUUUC   965 Target Full Sequence	3.0	Arabidopsis thaliana P-loop containing nucleoside triphosphate hydrolases superfamily protein mRNA	P-loop containing nucleoside triphosphate hydrolases superfamily protein(AT2G15730)	coding protein	psRNATarget
BX819580.1	ncRNA:24   AAAAUUUUCUACAUGUUCUCAAAA   1   ***||=|*|||||||||||||||* targets:897   AACUAGACGAUGUACAAGAGUUUC   920 Target Full Sequence	3.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB91ZB01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BT011217.1	ncRNA:24   AAAAUUUUCUACAUGUUCUCAAAA   1   ***||=|*|||||||||||||||* targets:921   AACUAGACGAUGUACAAGAGUUUC   944 Target Full Sequence	3.0	Arabidopsis thaliana At2g15730 gene, complete cds	NA	coding protein	psRNATarget
BT012148.1	ncRNA:24   AAAAUUUUCUACAUGUUCUCAAAA   1   ***||=|*|||||||||||||||* targets:863   AACUAGACGAUGUACAAGAGUUUC   886 Target Full Sequence	3.0	Arabidopsis thaliana At2g15730 mRNA, complete cds	NA	coding protein	psRNATarget