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BaseInfo

ncRNA ID	novel_ath_miR606
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr1:17483923-17483987 [-]
Reference genome	TAIR10
Source	SRR3707789;SRR3707794
Length	22
Mature sequence(if miRNA)	44 - UGGUGAUGAUGAAGAAAAAAUG - 65
Stem-loop(if miRNA)	U      G    --AG       GAC   UU   A  GGUGAU AUGA    AAAAAAU   CUU  AUC C  |||||| ||||    |||||||   |||  |||  CCAUUA UGCU    UUUUUUA   GAG  UAG A -      G    CUAA       ---   -U   U
Stem-loop sequence	UGGUGAUGAUGAAGAAAAAAUGACCUUUUAUCACAUGAUUGAGAUUUUUUAAUCUCGUGAUUACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BX819122.1	ncRNA:22   GUAAAAAAGAAGUAGUAGUGGU   1   ||*|||||||||||||*||||| targets:746   CAAUUUUUCUUCAUCAACACCA   767 Target Full Sequence	1.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB49ZC08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_001341507.1	ncRNA:22   GUAAAAAAGAAGUAGUAGUGGU   1   =**||||||||||||||||=|* targets:437   UUCUUUUUCUUCAUCAUCAUCU   458 Target Full Sequence	2.5	Arabidopsis thaliana Subtilase family protein partial mRNA	Subtilase family protein(AT4G21630)	coding protein	psRNATarget
NM_118284.2	ncRNA:22   GUAAAAAAGAAGUAGUAGUGGU   1   =**||||||||||||||||=|* targets:405   UUCUUUUUCUUCAUCAUCAUCU   426 Target Full Sequence	2.5	Arabidopsis thaliana Subtilase family protein partial mRNA	Subtilase family protein(AT4G21640)	coding protein	psRNATarget
DQ446857.1	ncRNA:22   GUAAAAAAGAAGUAGUAGUGGU   1   =**||||||||||||||||=|* targets:405   UUCUUUUUCUUCAUCAUCAUCU   426 Target Full Sequence	2.5	Arabidopsis thaliana clone pENTR221-At4g21640 subtilase family protein (At4g21640) mRNA, complete cds	NA	coding protein	psRNATarget
NM_117154.4	ncRNA:22   GUAAAAAAGAAGUAGUAGUGGU   1   *||||*||||||*||||||||| targets:135   AAUUUCUUCUUCUUCAUCACCA   156 Target Full Sequence	2.5	Arabidopsis thaliana Nodulin MtN3 family protein (SWEET7), mRNA	Nodulin MtN3 family protein(SWEET7)	coding protein	psRNATarget
AY087237.1	ncRNA:22   GUAAAAAAGAAGUAGUAGUGGU   1   *||||*||||||*||||||||| targets:31   AAUUUCUUCUUCUUCAUCACCA   52 Target Full Sequence	2.5	Arabidopsis thaliana clone 33161 mRNA, complete sequence	NA	coding protein	psRNATarget
BX829034.1	ncRNA:22   GUAAAAAAGAAGUAGUAGUGGU   1   *||||*||||||*||||||||| targets:14   AAUUUCUUCUUCUUCAUCACCA   35 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL62ZA11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_001338309.1	ncRNA:22   GUAAAA---AAGAAGUAGUAGUGGU   1   ||*|||---|||||||||||||||| targets:91   CACUUUAACUUCUUCAUCAUCACCA   115 Target Full Sequence	3.0	Arabidopsis thaliana transmembrane protein partial mRNA	transmembrane protein(AT3G17765)	coding protein	psRNATarget
NM_001339762.1	ncRNA:22   GUAAA-AAAGAAGUAGUAGUGGU   1   ||*||-||||||||||||||||* targets:165   CACUUGUUUCUUCAUCAUCACCU   187 Target Full Sequence	3.0	Arabidopsis thaliana salt-inducible zinc finger 1 (SZF1), mRNA	salt-inducible zinc finger 1(SZF1)	coding protein	psRNATarget
NM_115456.3	ncRNA:22   GUAAA-AAAGAAGUAGUAGUGGU   1   ||*||-||||||||||||||||* targets:120   CACUUGUUUCUUCAUCAUCACCU   142 Target Full Sequence	3.0	Arabidopsis thaliana salt-inducible zinc finger 1 (SZF1), mRNA	salt-inducible zinc finger 1(SZF1)	coding protein	psRNATarget
AY056282.1	ncRNA:22   GUAAA-AAAGAAGUAGUAGUGGU   1   ||*||-||||||||||||||||* targets:92   CACUUGUUUCUUCAUCAUCACCU   114 Target Full Sequence	3.0	Arabidopsis thaliana unknown protein (At3g55980) mRNA, complete cds	NA	coding protein	psRNATarget
BT008625.1	ncRNA:22   GUAAA-AAAGAAGUAGUAGUGGU   1   ||*||-||||||||||||||||* targets:29   CACUUGUUUCUUCAUCAUCACCU   51 Target Full Sequence	3.0	Arabidopsis thaliana clone RAFL09-89-N11 (R19914) unknown protein (At3g55980) mRNA, complete cds	NA	coding protein	psRNATarget
AK226861.1	ncRNA:22   GUAAA-AAAGAAGUAGUAGUGGU   1   ||*||-||||||||||||||||* targets:30   CACUUGUUUCUUCAUCAUCACCU   52 Target Full Sequence	3.0	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL08-18-O11	NA	coding protein	psRNATarget