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BaseInfo

ncRNA ID novel_ath_miR599
Species Arabidopsis thaliana
Class miRNA
Genome position Chr4:5213646-5213743 [+]
Reference genome TAIR10
Source SRR3707788
Length 24
Mature sequence(if miRNA) 1 - AUGUGGAUCUAUGUGGAAAAGAUU - 24
Stem-loop(if miRNA) A    -      -    G   AG    AG     GG AGGAGAA     A
 UGUG GAUCUA UGUG AAA  AUUG  AAGUU  G       GGAUC U
 |||| |||||| |||| |||  ||||  |||||  |       ||||| A
 AUAC CUAGGU GCAU UUU  UAAC  UUUAA  C       UUUAG G
G    U      U    A   AA    -G     AA --GUAAG     A
Stem-loop sequence AUGUGGAUCUAUGUGGAAAAGAUUGAGAAGUUGGGAGGAGAAGGAUCAUAGAGAUUUGAAUGCAAAAUUUGCAAUAAUUUAUACGUUGGAUCUCAUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001339254.1
ncRNA:24   UUAGAAAAGGUGUAUCUAGGUGUA   1
  **|=||||*|||||||||||||||
targets:1086   UUUUUUUUACACAUAGAUCCACAU   1109

1.0 Arabidopsis thaliana 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein mRNA 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein(AT3G46500) coding protein psRNATarget