ncRNA ID | novel_ath_miR599 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | Chr4:5213646-5213743 [+] |
Reference genome | TAIR10 |
Source | SRR3707788 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AUGUGGAUCUAUGUGGAAAAGAUU - 24 |
Stem-loop(if miRNA) |
A    -      -    G   AG    AG     GG AGGAGAA     A  UGUG GAUCUA UGUG AAA  AUUG  AAGUU  G       GGAUC U  |||| |||||| |||| |||  ||||  |||||  |       ||||| A  AUAC CUAGGU GCAU UUU  UAAC  UUUAA  C       UUUAG G G    U      U    A   AA    -G     AA --GUAAG     A |
Stem-loop sequence | AUGUGGAUCUAUGUGGAAAAGAUUGAGAAGUUGGGAGGAGAAGGAUCAUAGAGAUUUGAAUGCAAAAUUUGCAAUAAUUUAUACGUUGGAUCUCAUAG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_001339254.1 |
|
1.0 | Arabidopsis thaliana 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein mRNA | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein(AT3G46500) | coding protein | psRNATarget |