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BaseInfo

ncRNA ID	novel_ath_miR598
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr4:4559964-4560090 [+]
Reference genome	TAIR10
Source	SRR3707788
Length	24
Mature sequence(if miRNA)	104 - UGUAGGGUUAAUUUAUUGAGCAUG - 127
Stem-loop(if miRNA)	--     GU            -  U   UG ------    UG     ---   ACUAGGUUAAUUUGA   UGCUU  UAGGUUAGCUCU CG CAA  G      UGAU  AGUCU   GGG               G   |||||  |||||||||||| || |||  |      ||||  |||||   |||   ACGAG  AUUUAAUUGGGA GU GUU  U      AUUG  UUAGA   ACG               A GU     UU            U  -   GU CAAGUA    GU     UUC   GUGGCGUUGUCUCUG
Stem-loop sequence	UGCUUGUUAGGUUAGCUCUCGUCAAUGGUGAUUGAGUCUGGGACUAGGUUAAUUUGAGAGUCUCUGUUGCGGUGGCACUUAGAUUUGGUUAAUGAACUUGUUGUGUAGGGUUAAUUUAUUGAGCAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BX815024.1	ncRNA:24   GUACGAGUUAUUUAAUUGGGAUGU   1   |||--||||||||||||||||*|* targets:400   CAU--UCAAUAAAUUAACCCUUCU   421 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS25ZA02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AK119137.1	ncRNA:24   GUACGAGUUAUUUAAUUGGGAUGU   1   |||--||||||||||||||||*|* targets:1418   CAU--UCAAUAAAUUAACCCUUCU   1439 Target Full Sequence	2.5	Arabidopsis thaliana At1g64670 mRNA for unknown protein, complete cds, clone: RAFL21-48-O20	NA	coding protein	psRNATarget
BX815991.1	ncRNA:24   GUACGAGUUAUUUAAUUGGGAUGU   1   |||--||||||||||||||||*|* targets:1404   CAU--UCAAUAAAUUAACCCUUCU   1425 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH21ZB01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AY084590.1	ncRNA:24   GUACGAGUUAUUUAAUUGGGAUGU   1   |||--||||||||||||||||*|* targets:1479   CAU--UCAAUAAAUUAACCCUUCU   1500 Target Full Sequence	2.5	Arabidopsis thaliana clone 11266 mRNA, complete sequence	NA	coding protein	psRNATarget
NM_105142.4	ncRNA:24   GUACGAGUUAUUUAAUUGGGAUGU   1   |||--||||||||||||||||*|* targets:1522   CAU--UCAAUAAAUUAACCCUUCU   1543 Target Full Sequence	2.5	Arabidopsis thaliana alpha/beta-Hydrolases superfamily protein (BDG1), mRNA	alpha/beta-Hydrolases superfamily protein(BDG1)	coding protein	psRNATarget
NM_001334172.1	ncRNA:24   GUACGAGUUAUUUAAUUGGGAUGU   1   |||--||||||||||||||||*|* targets:1554   CAU--UCAAUAAAUUAACCCUUCU   1575 Target Full Sequence	2.5	Arabidopsis thaliana alpha/beta-Hydrolases superfamily protein (BDG1), mRNA	alpha/beta-Hydrolases superfamily protein(BDG1)	coding protein	psRNATarget
NM_001334171.1	ncRNA:24   GUACGAGUUAUUUAAUUGGGAUGU   1   |||--||||||||||||||||*|* targets:1596   CAU--UCAAUAAAUUAACCCUUCU   1617 Target Full Sequence	2.5	Arabidopsis thaliana alpha/beta-Hydrolases superfamily protein (BDG1), mRNA	alpha/beta-Hydrolases superfamily protein(BDG1)	coding protein	psRNATarget