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BaseInfo

ncRNA ID	novel_ath_miR593
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr1:7283465-7283659 [+]
Reference genome	TAIR10
Source	SRR3707787
Length	23
Mature sequence(if miRNA)	173 - UUGACGGGCUUGAUUCGAUAUUA - 195
Stem-loop(if miRNA)	--UA     --        AA     AUUAAUA      GG      A  -    ----A     UAGAAUUGACUGGUUUGGGUUGAUAAUAAUUUGCGAUAGAA     AUUGA  CGAGUUUG  UCGAU       UGGGAU  UUUACU CG GGUG     UAUUU                                         U     |||||  ||||||||  |||||       ||||||  |||||| || ||||     |||||     UAGCU  GUUCGGGC  AGUUA       AUCCUA  AAGUGG GC CCAU     AUUAA                                         U AUUA     UA        --     -----AG      --      -  A    CAUAA     CAUAUUAAUAUAAAAUUAACAGUAAGAUCCUAAAGUGAGGA
Stem-loop sequence	UAAUUGACGAGUUUGAAUCGAUAUUAAUAUGGGAUGGUUUACUACGGGUGAUAUUUUAGAAUUGACUGGUUUGGGUUGAUAAUAAUUUGCGAUAGAAUUAGGAGUGAAAUCCUAGAAUGACAAUUAAAAUAUAAUUAUACAAUUAAAUACUACCACGGGUGAAAUCCUAGAAUUGACGGGCUUGAUUCGAUAUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001334366.1	ncRNA:23   AUUAUAGCUUAGUUCGGGCAGUU   1   *=|*||=|||||||||=|||||| targets:161   AGACAUUGAAUCAAGCUCGUCAA   183 Target Full Sequence	2.5	Arabidopsis thaliana C2H2 and C2HC zinc fingers superfamily protein (JAG), mRNA	C2H2 and C2HC zinc fingers superfamily protein(JAG)	coding protein	psRNATarget
NM_001334365.1	ncRNA:23   AUUAUAGCUUAGUUCGGGCAGUU   1   *=|*||=|||||||||=|||||| targets:267   AGACAUUGAAUCAAGCUCGUCAA   289 Target Full Sequence	2.5	Arabidopsis thaliana C2H2 and C2HC zinc fingers superfamily protein (JAG), mRNA	C2H2 and C2HC zinc fingers superfamily protein(JAG)	coding protein	psRNATarget
AY465924.1	ncRNA:23   AUUAUAGCUUAGUUCGGGCAGUU   1   *=|*||=|||||||||=|||||| targets:472   AGACAUUGAAUCAAGCUCGUCAA   494 Target Full Sequence	2.5	Arabidopsis thaliana JAGGED mRNA, complete cds	NA	coding protein	psRNATarget
NM_105519.4	ncRNA:23   AUUAUAGCUUAGUUCGGGCAGUU   1   *=|*||=|||||||||=|||||| targets:502   AGACAUUGAAUCAAGCUCGUCAA   524 Target Full Sequence	2.5	Arabidopsis thaliana C2H2 and C2HC zinc fingers superfamily protein (JAG), mRNA	C2H2 and C2HC zinc fingers superfamily protein(JAG)	coding protein	psRNATarget
BT030094.1	ncRNA:23   AUUAUAGCUUAGUUCGGGCAGUU   1   ****||*|||||||||=|||||| targets:595   GCCCAUGGAAUCAAGCUCGUCAA   617 Target Full Sequence	2.5	Arabidopsis thaliana At3g02860 gene, complete cds	NA	coding protein	psRNATarget
AY086295.1	ncRNA:23   AUUAUAGCUUAGUUCGGGCAGUU   1   ****||*|||||||||=|||||| targets:739   GCCCAUGGAAUCAAGCUCGUCAA   761 Target Full Sequence	2.5	Arabidopsis thaliana clone 2355 mRNA, complete sequence	NA	coding protein	psRNATarget
AK229101.1	ncRNA:23   AUUAUAGCUUAGUUCGGGCAGUU   1   ****||*|||||||||=|||||| targets:808   GCCCAUGGAAUCAAGCUCGUCAA   830 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-38-I08	NA	coding protein	psRNATarget
NM_180174.2	ncRNA:23   AUUAUAGCUUAGUUCGGGCAGUU   1   ****||*|||||||||=|||||| targets:808   GCCCAUGGAAUCAAGCUCGUCAA   830 Target Full Sequence	2.5	Arabidopsis thaliana zinc ion binding protein mRNA	zinc ion binding protein(AT3G02860)	coding protein	psRNATarget
NM_111154.4	ncRNA:23   AUUAUAGCUUAGUUCGGGCAGUU   1   ****||*|||||||||=|||||| targets:929   GCCCAUGGAAUCAAGCUCGUCAA   951 Target Full Sequence	2.5	Arabidopsis thaliana zinc ion binding protein mRNA	zinc ion binding protein(AT3G02860)	coding protein	psRNATarget