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BaseInfo

ncRNA ID ath-miR406
Species Arabidopsis thaliana
Class miRNA
Genome position chr1:19430078-19430277 [-]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 74 - UAGAAUGCUAUUGUAAUCCAG - 94
Stem-loop(if miRNA) UAAA    UAA          UCA      AGCACAUAUCAAU    --       A     C    AUUAGUUCUUAAA          -AG CAGUAACUAUUCAAAUAGAAU
    GUCU   UUUUUAGUUA   CGAUUU             CUAU  AGAUUUG UUUUU UUUU             UUUUGAUUUG   A                     G
    ||||   ||||||||||   ||||||             ||||  ||||||| ||||| ||||             ||||||||||   |                     C
    UAGG   AAAAAUCAAU   GCUAAA             GAUA  UCUGAGC AAAAA AAAA             AAAACUAAGC   G                     U
--GG    ---          -UA      ----------AAU    CU       -     A    -------------          AAA AAAGCCUAAGACCUAAUGUUA
Stem-loop sequence UAAAGUCUUAAUUUUUAGUUAUCACGAUUUAGCACAUAUCAAUCUAUAGAUUUGAUUUUUCUUUUAUUAGUUCUUAAAUUUUGAUUUGAGACAGUAACUAUUCAAAUAGAAUGCUAUUGUAAUCCAGAAUCCGAAAGAAACGAAUCAAAAAAAAAAAAAACGAGUCUUCAUAGUAAAAAUCGAUUAACUAAAAAGGAUGG

Reference

1 PMID:15258262
"Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis";
Sunkar R, Zhu JK;
Plant Cell. 16:2001-2019(2004).