ncRNA ID | ath-miR406 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr1:19430078-19430277 [-] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 74 - UAGAAUGCUAUUGUAAUCCAG - 94 |
Stem-loop(if miRNA) |
UAAA    UAA          UCA      AGCACAUAUCAAU    --       A     C    AUUAGUUCUUAAA          -AG CAGUAACUAUUCAAAUAGAAU     GUCU   UUUUUAGUUA   CGAUUU             CUAU  AGAUUUG UUUUU UUUU             UUUUGAUUUG   A                     G     ||||   ||||||||||   ||||||             ||||  ||||||| ||||| ||||             ||||||||||   |                     C     UAGG   AAAAAUCAAU   GCUAAA             GAUA  UCUGAGC AAAAA AAAA             AAAACUAAGC   G                     U --GG    ---          -UA      ----------AAU    CU       -     A    -------------          AAA AAAGCCUAAGACCUAAUGUUA |
Stem-loop sequence | UAAAGUCUUAAUUUUUAGUUAUCACGAUUUAGCACAUAUCAAUCUAUAGAUUUGAUUUUUCUUUUAUUAGUUCUUAAAUUUUGAUUUGAGACAGUAACUAUUCAAAUAGAAUGCUAUUGUAAUCCAGAAUCCGAAAGAAACGAAUCAAAAAAAAAAAAAACGAGUCUUCAUAGUAAAAAUCGAUUAACUAAAAAGGAUGG |
1 | PMID:15258262
"Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"; Sunkar R, Zhu JK; Plant Cell. 16:2001-2019(2004). |