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BaseInfo

ncRNA ID novel_ath_miR587
Species Arabidopsis thaliana
Class miRNA
Genome position Chr5:17985843-17986006 [+]
Reference genome TAIR10
Source SRR3707787
Length 24
Mature sequence(if miRNA) 141 - AUCUCGACCGUUCGAACUUUGUUU - 164
Stem-loop(if miRNA) --  C   A G               C             AG      C                        -------    U
  AC AAG U GAACGGUCGAGAUGA UAACCGAUAUUAU  AAAUAG GAAGAUAUGAUUAUAGAAGAAUCA       ACCA C
  || ||| | ||||||||||||||| |||||||||||||  |||||| ||||||||||||||||||||||||       |||| U
  UG UUC A CUUGCCAGCUCUACU AUUGGUUAUAAUA  UUUAUU CUUCUAUACUAAUAUCUUUUUAGU       UGGU U
UU  U   A G               A             CU      A                        UCUUCUU    U
Stem-loop sequence ACCAAGAUGGAACGGUCGAGAUGACUAACCGAUAUUAUAGAAAUAGCGAAGAUAUGAUUAUAGAAGAAUCAACCAUCUUUUGGUUUCUUCUUGAUUUUUCUAUAAUCAUAUCUUCAUUAUUUUCAUAAUAUUGGUUAAUCAUCUCGACCGUUCGAACUUUGUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001125900.2
ncRNA:24   UUUGUUUCAAGCUUGCCAGCUCUA   1
  ||||*|||*|*|||||||||||||
targets:866   AAACCAAGAUGGAACGGUCGAGAU   889

2.0 Arabidopsis thaliana hypothetical protein mRNA hypothetical protein(AT5G44585) coding protein psRNATarget