ncRNA ID | novel_ath_miR587 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | Chr5:17985843-17986006 [+] |
Reference genome | TAIR10 |
Source | SRR3707787 |
Length | 24 |
Mature sequence(if miRNA) | 141 - AUCUCGACCGUUCGAACUUUGUUU - 164 |
Stem-loop(if miRNA) |
--  C   A G               C             AG      C                        -------    U   AC AAG U GAACGGUCGAGAUGA UAACCGAUAUUAU  AAAUAG GAAGAUAUGAUUAUAGAAGAAUCA       ACCA C   || ||| | ||||||||||||||| |||||||||||||  |||||| ||||||||||||||||||||||||       |||| U   UG UUC A CUUGCCAGCUCUACU AUUGGUUAUAAUA  UUUAUU CUUCUAUACUAAUAUCUUUUUAGU       UGGU U UU  U   A G               A             CU      A                        UCUUCUU    U |
Stem-loop sequence | ACCAAGAUGGAACGGUCGAGAUGACUAACCGAUAUUAUAGAAAUAGCGAAGAUAUGAUUAUAGAAGAAUCAACCAUCUUUUGGUUUCUUCUUGAUUUUUCUAUAAUCAUAUCUUCAUUAUUUUCAUAAUAUUGGUUAAUCAUCUCGACCGUUCGAACUUUGUUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_001125900.2 |
|
2.0 | Arabidopsis thaliana hypothetical protein mRNA | hypothetical protein(AT5G44585) | coding protein | psRNATarget |