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BaseInfo

ncRNA ID	novel_ath_miR576
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr1:23388231-23388380 [-]
Reference genome	TAIR10
Source	SRR3707786;SRR3707796
Length	21
Mature sequence(if miRNA)	1 - UUGGAUCUCUGUCUUCUCAAC - 21
Stem-loop(if miRNA)	--C       A            C         UC       A  C     AC    A       G   UU   A    GGGAAGA AGAGAUCUAGUA AGUAACUCA  CUCGGAA UU CGGUC  UGGA AAAGUUU GGA  GGU C    ||||||| |||||||||||| |||||||||  ||||||| || |||||  |||| ||||||| |||  ||| A    CUCUUCU UCUCUAGGUUGU UCGUUGGGU  GAGCCUU AA GUCAG  ACUU UUUCAAA UCU  CCG A CAA       G            A         UA       G  A     AA    C       G   -U   U
Stem-loop sequence	CGGGAAGAAAGAGAUCUAGUACAGUAACUCAUCCUCGGAAAUUCCGGUCACUGGAAAAAGUUUGGGAUUGGUACAAUGCCUUCUGAAACUUUCUUCAAAGACUGAAAGUUCCGAGAUUGGGUUGCUAUGUUGGAUCUCUGUCUUCUCAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001337853.1	ncRNA:21   CAACUCUUCUGUCUCUAGGUU   1   **||=|||||||||||||||* targets:1177   UCUGGGAAGACAGAGAUCCAU   1197 Target Full Sequence	2.0	Arabidopsis thaliana demeter-like 2 (DML2), mRNA	demeter-like 2(DML2)	coding protein	psRNATarget
NM_111836.5	ncRNA:21   CAACUCUUCUGUCUCUAGGUU   1   **||=|||||||||||||||* targets:1047   UCUGGGAAGACAGAGAUCCAU   1067 Target Full Sequence	2.0	Arabidopsis thaliana demeter-like 2 (DML2), partial mRNA	demeter-like 2(DML2)	coding protein	psRNATarget
NM_001340497.1	ncRNA:21   CAACUCUUCUGUCUCUAGGUU   1   |*||*||||||||||||=||| targets:340   GCUGUGAAGACAGAGAUUCAA   360 Target Full Sequence	2.5	Arabidopsis thaliana calcium-dependent kinase-like protein (CPK22), mRNA	calcium-dependent kinase-like protein(CPK22)	coding protein	psRNATarget
NM_001340498.1	ncRNA:21   CAACUCUUCUGUCUCUAGGUU   1   |*||*||||||||||||=||| targets:196   GCUGUGAAGACAGAGAUUCAA   216 Target Full Sequence	2.5	Arabidopsis thaliana calcium-dependent kinase-like protein (CPK22), partial mRNA	calcium-dependent kinase-like protein(CPK22)	coding protein	psRNATarget
NM_001340499.1	ncRNA:21   CAACUCUUCUGUCUCUAGGUU   1   |*||*||||||||||||=||| targets:238   GCUGUGAAGACAGAGAUUCAA   258 Target Full Sequence	2.5	Arabidopsis thaliana calcium-dependent kinase-like protein (CPK22), partial mRNA	calcium-dependent kinase-like protein(CPK22)	coding protein	psRNATarget
NM_001340496.1	ncRNA:21   CAACUCUUCUGUCUCUAGGUU   1   |*||*||||||||||||=||| targets:238   GCUGUGAAGACAGAGAUUCAA   258 Target Full Sequence	2.5	Arabidopsis thaliana calcium-dependent kinase-like protein (CPK22), partial mRNA	calcium-dependent kinase-like protein(CPK22)	coding protein	psRNATarget