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BaseInfo

ncRNA ID novel_ath_miR574
Species Arabidopsis thaliana
Class miRNA
Genome position Chr3:14924462-14924552 [-]
Reference genome TAIR10
Source SRR3707786
Length 23
Mature sequence(if miRNA) 69 - AGGUGAGCUAGUAGGUAACGAUG - 91
Stem-loop(if miRNA) --A          UA    A   -    --   C   UU U  AAUA
   GGUGAGCUAG  GGUA CGA UGGU  UUA UUG  G UC    A
   ||||||||||  |||| ||| ||||  ||| |||  | ||
   CUAUUUGAUU  UCAU GCU GUCA  AAU AAC  C AG    A
UCC          GG    A   U    UU   U   UC C  AAUA
Stem-loop sequence AGGUGAGCUAGUAGGUAACGAUGGUUUACUUGUUGUUCAAUAAAAUAAGACCCUCAAUUAAUUACUGUUCGAUACUGGUUAGUUUAUCCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_121532.4
ncRNA:23   GUAGCAAUGGAUGAUCGAGUGGA   1
  |=|=*||*=||||||||||||||
targets:230   CGUUUUUCUCUACUAGCUCACCU   252

3.0 Arabidopsis thaliana Pentatricopeptide repeat (PPR) superfamily protein mRNA Pentatricopeptide repeat (PPR) superfamily protein(AT5G15280) coding protein psRNATarget