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BaseInfo

ncRNA ID	novel_ath_miR560
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr1:29526806-29527028 [+]
Reference genome	TAIR10
Source	SRR3499595
Length	23
Mature sequence(if miRNA)	1 - UUAGUCAAUGCUAAUGAUUACUG - 23
Stem-loop(if miRNA)	--         G         AC       U    CU    AA    A     AC                      CC    A                    CUUUUUU   UUAGUCAAU CUAAUGAUU  UGAGUCA AUGA  CAUG  UAUU ACGUG  AUAUUUUUUAACUAAAUCGAUG  GUUU GUUAUUUUGAAUUUAAUUUU       A   ||||||||| |||||||||  ||||||| ||||  ||||  |||| |||||  ||||||||||||||||||||||  |||| ||||||||||||||||||||       A   AAUCAGUUA GAUUGCUAA  ACUCAGU UACU  GUAC  AUAA UGCAC  UAUAAGAAGUUGAUUUGGUUGC  UAAA CGAUAAAACUUAAGUUAAAA       A AC         A         CA       U    AU    AC    C     CA                      AA    A                    ACGAUUA
Stem-loop sequence	UUAGUCAAUGCUAAUGAUUACUGAGUCAUAUGACUCAUGAAUAUUAACGUGACAUAUUUUUUAACUAAAUCGAUGCCGUUUAGUUAUUUUGAAUUUAAUUUUCUUUUUUAAAAUUAGCAAAAAUUGAAUUCAAAAUAGCAAAAUAACGUUGGUUUAGUUGAAGAAUAUACCACGUCAAUACACAUGUAUCAUUUGACUCAACAAUCGUUAGAAUUGACUAACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_106496.5	ncRNA:23   GUCAUUAGUAAUCGUAACUGAUU   1   ||**||||=||||*||||||||| targets:143   CAACAAUCGUUAGAAUUGACUAA   165 Target Full Sequence	2.5	Arabidopsis thaliana cytochrome P450, family 708, subfamily A, polypeptide 3 (CYP708A3), mRNA	cytochrome P450, family 708, subfamily A, polypeptide 3(CYP708A3)	coding protein	psRNATarget
NM_001334827.1	ncRNA:23   GUCAUUAGUAAUCGUAACUGAUU   1   ||**||||=||||*||||||||| targets:143   CAACAAUCGUUAGAAUUGACUAA   165 Target Full Sequence	2.5	Arabidopsis thaliana cytochrome P450, family 708, subfamily A, polypeptide 3 (CYP708A3), mRNA	cytochrome P450, family 708, subfamily A, polypeptide 3(CYP708A3)	coding protein	psRNATarget