Search result

BaseInfo

ncRNA ID novel_ath_miR558
Species Arabidopsis thaliana
Class miRNA
Genome position Chr3:9875910-9876058 [-]
Reference genome TAIR10
Source SRR3499594;ERR654971;SRR1312903
Length 21
Mature sequence(if miRNA) 129 - UAGCCAAGGAUGACUUGCCUG - 149
Stem-loop(if miRNA) --          U    U      -U   UUUC    C  U        UUUAAGUUCGUG     UG           G U
  UAGCCAAGGA GACU GCCUGA  CUU    ACCU CA GAUUCAAU            GAUUU  GAUUAUUAUGC U U
  |||||||||| |||| ||||||  |||    |||| || ||||||||            |||||  ||||||||||| | A
  AUCGGUUUCU CUGA CGGACU  GGA    UGGG GU CUAAGUUG            CUAGA  UUAAUAAUAUG A A
CU          -    -      UU   ---U    C  U        ----------UA     GU           G A
Stem-loop sequence UAGCCAAGGAUGACUUGCCUGAUCUUUUUCACCUCCAUGAUUCAAUUUUAAGUUCGUGGAUUUUGGAUUAUUAUGCGUUUAAAAGGUAUAAUAAUUUGAGAUCAUGUUGAAUCUUGCGGGUUAGGUUUCAGGCAGUCUCUUUGGCUAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001338098.1
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *|||*||||||||||||||||
targets:1271   AAGGGAAGUCAUCCUUGGCUA   1291

1.0 Arabidopsis thaliana nuclear factor Y, subunit A6 (NF-YA6), mRNA nuclear factor Y, subunit A6(NF-YA6) coding protein psRNATarget
NM_112256.3
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *|||*||||||||||||||||
targets:1624   AAGGGAAGUCAUCCUUGGCUA   1644

1.0 Arabidopsis thaliana nuclear factor Y, subunit A6 (NF-YA6), mRNA nuclear factor Y, subunit A6(NF-YA6) coding protein psRNATarget
AY140028.1
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *=||*||||||||||||||||
targets:1258   AGGGGAAGUCAUCCUUGGCUA   1278

1.0 Arabidopsis thaliana CCAAT-binding factor B subunit-like protein, putative (At1g72830) mRNA, complete cds NA coding protein psRNATarget
Y13722.1
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *=||*||||||||||||||||
targets:1319   AGGGGAAGUCAUCCUUGGCUA   1339

1.0 Arabidopsis thaliana mRNA for Hap2c transcription factor NA coding protein psRNATarget
NM_001334553.1
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *=||*||||||||||||||||
targets:1368   AGGGGAAGUCAUCCUUGGCUA   1388

1.0 Arabidopsis thaliana nuclear factor Y, subunit A3 (NF-YA3), mRNA nuclear factor Y, subunit A3(NF-YA3) coding protein psRNATarget
AY057539.1
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *=||*||||||||||||||||
targets:1487   AGGGGAAGUCAUCCUUGGCUA   1507

1.0 Arabidopsis thaliana At1g72830/F3N23_3 mRNA, complete cds NA coding protein psRNATarget
NM_001036195.5
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *=||*||||||||||||||||
targets:1413   AGGGGAAGUCAUCCUUGGCUA   1433

1.0 Arabidopsis thaliana nuclear factor Y, subunit A3 (NF-YA3), mRNA nuclear factor Y, subunit A3(NF-YA3) coding protein psRNATarget
NM_105941.8
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *=||*||||||||||||||||
targets:1741   AGGGGAAGUCAUCCUUGGCUA   1761

1.0 Arabidopsis thaliana nuclear factor Y, subunit A3 (NF-YA3), mRNA nuclear factor Y, subunit A3(NF-YA3) coding protein psRNATarget
BX813919.1
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *|||*|||||||||||||||=
targets:1199   AAGGGAAGUCAUCCUUGGCUG   1219

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB47ZG01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY088950.1
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *|||*|||||||||||||||=
targets:1232   AAGGGAAGUCAUCCUUGGCUG   1252

2.0 Arabidopsis thaliana clone 106674 mRNA, complete sequence NA coding protein psRNATarget
NM_202121.2
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *|||*|||||||||||||||=
targets:1305   AAGGGAAGUCAUCCUUGGCUG   1325

2.0 Arabidopsis thaliana nuclear factor Y, subunit A8 (NF-YA8), mRNA nuclear factor Y, subunit A8(NF-YA8) coding protein psRNATarget
NM_101621.3
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *|||*|||||||||||||||=
targets:1319   AAGGGAAGUCAUCCUUGGCUG   1339

2.0 Arabidopsis thaliana nuclear factor Y, subunit A8 (NF-YA8), mRNA nuclear factor Y, subunit A8(NF-YA8) coding protein psRNATarget
NM_001198095.1
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *|||*|||||||||||||||=
targets:1505   AAGGGAAGUCAUCCUUGGCUG   1525

2.0 Arabidopsis thaliana nuclear factor Y, subunit A8 (NF-YA8), mRNA nuclear factor Y, subunit A8(NF-YA8) coding protein psRNATarget
BX815988.1
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *|||*|||||||||||||||=
targets:1623   AAGGGAAGUCAUCCUUGGCUG   1643

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH20ZH03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_202122.2
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *|||*|||||||||||||||=
targets:1661   AAGGGAAGUCAUCCUUGGCUG   1681

2.0 Arabidopsis thaliana nuclear factor Y, subunit A8 (NF-YA8), mRNA nuclear factor Y, subunit A8(NF-YA8) coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.