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BaseInfo

ncRNA ID novel_ath_miR556
Species Arabidopsis thaliana
Class miRNA
Genome position Chr1:11089033-11089136 [+]
Reference genome TAIR10
Source SRR3499593
Length 24
Mature sequence(if miRNA) 81 - AUAUAUGUCAUAAAGUAGAUAUUU - 104
Stem-loop(if miRNA) ---AU G     A    U      AUUG    C   AAUAUCAA          A
     U UACUU UGUG UAUAUA    AAUU ACA        UUUAAUAUAU U
     | ||||| |||| ||||||    |||| |||        ||||||||||
     A AUGAA AUAC GUAUAU    UUGA UGU        AAAUUAUAUA A
UUUAU G     -    U      -AUA    A   ---AACAA          U
Stem-loop sequence AUUGUACUUAUGUGUUAUAUAAUUGAAUUCACAAAUAUCAAUUUAAUAUAUAUAUAUAUAUUAAAAACAAUGUAAGUUAUAUAUAUGUCAUAAAGUAGAUAUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001341310.1
ncRNA:24   UUUAUAGAUGAAAUACUGUAUAUA   1
  |=|||**||*||||||||||||||
targets:1240   AGAUAAAUAGUUUAUGACAUAUAU   1263

3.0 Arabidopsis thaliana K-box region and MADS-box transcription factor family protein (AG), mRNA K-box region and MADS-box transcription factor family protein(AG) coding protein psRNATarget