ncRNA ID | novel_ath_miR556 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | Chr1:11089033-11089136 [+] |
Reference genome | TAIR10 |
Source | SRR3499593 |
Length | 24 |
Mature sequence(if miRNA) | 81 - AUAUAUGUCAUAAAGUAGAUAUUU - 104 |
Stem-loop(if miRNA) |
---AU G     A    U      AUUG    C   AAUAUCAA          A      U UACUU UGUG UAUAUA    AAUU ACA        UUUAAUAUAU U      | ||||| |||| ||||||    |||| |||        ||||||||||      A AUGAA AUAC GUAUAU    UUGA UGU        AAAUUAUAUA A UUUAU G     -    U      -AUA    A   ---AACAA          U |
Stem-loop sequence | AUUGUACUUAUGUGUUAUAUAAUUGAAUUCACAAAUAUCAAUUUAAUAUAUAUAUAUAUAUUAAAAACAAUGUAAGUUAUAUAUAUGUCAUAAAGUAGAUAUUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_001341310.1 |
|
3.0 | Arabidopsis thaliana K-box region and MADS-box transcription factor family protein (AG), mRNA | K-box region and MADS-box transcription factor family protein(AG) | coding protein | psRNATarget |