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BaseInfo

ncRNA ID	novel_ath_miR555
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr1:26285192-26285268 [+]
Reference genome	TAIR10
Source	SRR3222445
Length	24
Mature sequence(if miRNA)	54 - AUAUAAGAGUUAAAAUGAGAUGUU - 77
Stem-loop(if miRNA)	--                              AAAUGU   CAUCUCAUUUUAACUUUUAUAUAAGAGACA      C   ||||||||||||||||||||||||||||||      A   GUAGAGUAAAAUUGAGAAUAUAUUCUCUGU      U UU                              AAAAUU
Stem-loop sequence	CAUCUCAUUUUAACUUUUAUAUAAGAGACAAAAUGUCAUUUAAAAUGUCUCUUAUAUAAGAGUUAAAAUGAGAUGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_148726.3	ncRNA:24   UUGUAGAGUAAAAUUGAGAAUAUA   1   =|==*||=||*||||||||||||| targets:2   GAUGGCUUAUGUUAACUCUUAUAU   25 Target Full Sequence	2.0	Arabidopsis thaliana Legume lectin family protein mRNA	Legume lectin family protein(AT3G15356)	coding protein	psRNATarget
NM_105653.5	ncRNA:24   UUGU----AGAGUAAAAUUGAGAAUAUA   1   ||=|----|||||*|||*|||||||||| targets:188   AAUACCCUUCUCACUUUCACUCUUAUAU   215 Target Full Sequence	2.5	Arabidopsis thaliana nitrate transporter 1:2 (NRT1:2), mRNA	nitrate transporter 1:2(NRT1:2)	coding protein	psRNATarget
NM_102184.5	ncRNA:24   UUGUAGAGUAAAAUUGAGAAUAUA   1   *||*||||*||||*|||||||||| targets:843   UACUUCUCUUUUUCACUCUUAUAU   866 Target Full Sequence	2.5	Arabidopsis thaliana Plant invertase/pectin methylesterase inhibitor superfamily protein mRNA	Plant invertase/pectin methylesterase inhibitor superfamily protein(AT1G23350)	coding protein	psRNATarget