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BaseInfo

ncRNA ID	novel_ath_miR529
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr5:2342549-2342606 [-]
Reference genome	TAIR10
Source	SRR3178444;SRR3178445
Length	24
Mature sequence(if miRNA)	35 - AUAGUAUAUAUAUAUAUAUAUAUA - 58
Stem-loop(if miRNA)	--A         --U              A    UAGUAUAUA   AUAUAUAUAUAUAU U    |||||||||   ||||||||||||||    AUCAUAUAU   UAUAUAUAUAUAUA A GGA         CAU              U
Stem-loop sequence	AUAGUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUUACUAUAUACUAAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_111413.5	ncRNA:24   AUAU--AUAUAUAUAUAUAUAUGAUA   1   ||||--|||||||||||||||||||| targets:1810   UAUACAUAUAUAUAUAUAUAUACUAU   1835 Target Full Sequence	0.0	Arabidopsis thaliana Major facilitator superfamily protein mRNA	Major facilitator superfamily protein(AT3G05400)	coding protein	psRNATarget
NM_001202885.1	ncRNA:24   AUAU--AUAUAUAUAUAUAUAUGAUA   1   ||||--|||||||||||||||||||| targets:1529   UAUACAUAUAUAUAUAUAUAUACUAU   1554 Target Full Sequence	0.0	Arabidopsis thaliana Major facilitator superfamily protein mRNA	Major facilitator superfamily protein(AT3G05400)	coding protein	psRNATarget
AJ249971.1	ncRNA:24   AUAU--AUAUAUAUAUAUAUAUGAUA   1   ||||--|||||||||||||||||||| targets:1187   UAUACAUAUAUAUAUAUAUAUACUAU   1212 Target Full Sequence	0.0	Arabidopsis thaliana partial mRNA for putative sugar transporter (SUGTL5 gene)	NA	coding protein	psRNATarget
BX825522.1	ncRNA:24   AUAU--AUAUAUAUAUAUAUAUGAUA   1   ||||--|||||||||||||||||||| targets:460   UAUACAUAUAUAUAUAUAUAUACUAU   485 Target Full Sequence	0.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL42ZB05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AK230133.1	ncRNA:24   AUAUAUAUAUAUAUAUAUAUGAUA   1   |||||||||||||||||||||||* targets:273   UAUAUAUAUAUAUAUAUAUACUAC   296 Target Full Sequence	1.0	Arabidopsis thaliana mRNA for hypothetical protein, partial cds, clone: RAFL22-81-F10	NA	coding protein	psRNATarget
NM_124485.3	ncRNA:24   AUAUAUAUAUAUAUAUAUAUGAUA   1   ||||||||||||||||||||||*| targets:3123   UAUAUAUAUAUAUAUAUAUACUCU   3146 Target Full Sequence	1.5	Arabidopsis thaliana NADPH/respiratory burst oxidase protein D (RHD2), mRNA	NADPH/respiratory burst oxidase protein D(RHD2)	coding protein	psRNATarget
AK117159.1	ncRNA:24   AUAUAUAUAUAUAUAUAUAUGAUA   1   ||||||||||||||||||||||*| targets:3093   UAUAUAUAUAUAUAUAUAUACUCU   3116 Target Full Sequence	1.5	Arabidopsis thaliana At5g51060 mRNA for putative respiratory burst oxidase protein, complete cds, clone: RAFL16-70-B03	NA	coding protein	psRNATarget
NM_203271.2	ncRNA:24   AUAUAUAUAUAUAUAUAUAUGAUA   1   *|||||||||||||||||||=||| targets:1740   CAUAUAUAUAUAUAUAUAUAUUAU   1763 Target Full Sequence	1.5	Arabidopsis thaliana ankyrin repeat protein (AKRP), mRNA	ankyrin repeat protein(AKRP)	coding protein	psRNATarget
NM_126003.3	ncRNA:24   AUAUAUAUAUAUAUAUAUAUGAUA   1   *|||||||||||||||||||=||| targets:1661   CAUAUAUAUAUAUAUAUAUAUUAU   1684 Target Full Sequence	1.5	Arabidopsis thaliana ankyrin repeat protein (AKRP), mRNA	ankyrin repeat protein(AKRP)	coding protein	psRNATarget
AK316680.1	ncRNA:24   AUAUAUAUAUAUAUAUAUAUGAUA   1   *|||||||||||||||||||=||| targets:1569   CAUAUAUAUAUAUAUAUAUAUUAU   1592 Target Full Sequence	1.5	Arabidopsis thaliana AT5G66055 mRNA, complete cds, clone: RAFL09-32-K10	NA	coding protein	psRNATarget
NM_111636.3	ncRNA:24   AUAUAUAUAUAUAUAUAUAUGAUA   1   |||||||||||||||||||||*|| targets:4   UAUAUAUAUAUAUAUAUAUACAAU   27 Target Full Sequence	1.5	Arabidopsis thaliana Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein mRNA	Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein(AT3G07570)	coding protein	psRNATarget
NM_124101.1	ncRNA:24   AUAUAUAUAUAUAUAUAUAUGAUA   1   ||||||||||||||||||||*||| targets:17   UAUAUAUAUAUAUAUAUAUAAUAU   40 Target Full Sequence	1.5	Arabidopsis thaliana F-box and associated interaction domains-containing protein partial mRNA	F-box and associated interaction domains-containing protein(AT5G47300)	coding protein	psRNATarget
NM_113092.5	ncRNA:24   AUAUAUAUAUAUAUAUAUAUGAUA   1   ||||||||||||||||||||||*| targets:986   UAUAUAUAUAUAUAUAUAUACUUU   1009 Target Full Sequence	1.5	Arabidopsis thaliana Receptor-like protein kinase-related family protein mRNA	Receptor-like protein kinase-related family protein(AT3G21960)	coding protein	psRNATarget
NM_120294.6	ncRNA:24   AUAUAUAUAUAUAUAUAUAUGAUA   1   |||||||||||||||||||||*|| targets:676   UAUAUAUAUAUAUAUAUAUACAAU   699 Target Full Sequence	1.5	Arabidopsis thaliana transmembrane protein mRNA	transmembrane protein(AT5G02160)	coding protein	psRNATarget
AK118635.1	ncRNA:24   AUAUAUAUAUAUAUAUAUAUGAUA   1   |||||||||||||||||||||*|| targets:629   UAUAUAUAUAUAUAUAUAUACAAU   652 Target Full Sequence	1.5	Arabidopsis thaliana At5g02160 mRNA for unknown protein, complete cds, clone: RAFL19-90-D19	NA	coding protein	psRNATarget
BX831965.1	ncRNA:24   AUAUAUAUAUAUAUAUAUAU-GAUA   1   ||||||||||||||||||||-|||| targets:1430   UAUAUAUAUAUAUAUAUAUAUCUAU   1454 Target Full Sequence	3.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH42ZC07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget