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BaseInfo

ncRNA ID	novel_ath_miR526
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr4:11440527-11440591 [+]
Reference genome	TAIR10
Source	SRR3178443
Length	24
Mature sequence(if miRNA)	1 - AUUGAAUAUAUAUAUAUAUAUAUA - 24
Stem-loop(if miRNA)	--AU              -             A     UGAAUAUAUAUAUA UAUAUAUAUAUAU U     |||||||||||||| |||||||||||||     AUUUAUAUAUAUAU AUAUAUAUAUAUA A AUGU              U             U
Stem-loop sequence	AUUGAAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUUAUAUAUAUAUUUAUGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_118486.6	ncRNA:24   AUAUAUAUAUAUAUAUAUAAGUUA   1   |||||||||||||||||||||||* targets:1146   UAUAUAUAUAUAUAUAUAUUCAAA   1169 Target Full Sequence	1.0	Arabidopsis thaliana WRKY family transcription factor (WRKY29), mRNA	WRKY family transcription factor(WRKY29)	coding protein	psRNATarget
AY086222.1	ncRNA:24   AUAUAUAUAUAUAUAUAUAAGUUA   1   |||||||||||||||||||||||* targets:443   UAUAUAUAUAUAUAUAUAUUCAAA   466 Target Full Sequence	1.0	Arabidopsis thaliana clone 2265 mRNA, complete sequence	NA	coding protein	psRNATarget
NM_100344.1	ncRNA:24   AUAUAUAUAUAUAUAUAUAAGUUA   1   |||||||||||||||||||||||* targets:443   UAUAUAUAUAUAUAUAUAUUCAAA   466 Target Full Sequence	1.0	Arabidopsis thaliana Plant self-incompatibility protein S1 family mRNA	Plant self-incompatibility protein S1 family(AT1G04645)	coding protein	psRNATarget
NM_111636.3	ncRNA:24   AUAUAUAUAUAUAUAUAUAAGUUA   1   |||||||||||||||||||*|||| targets:4   UAUAUAUAUAUAUAUAUAUACAAU   27 Target Full Sequence	1.5	Arabidopsis thaliana Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein mRNA	Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein(AT3G07570)	coding protein	psRNATarget
NM_120294.6	ncRNA:24   AUAUAUAUAUAUAUAUAUAAGUUA   1   |||||||||||||||||||*|||| targets:676   UAUAUAUAUAUAUAUAUAUACAAU   699 Target Full Sequence	1.5	Arabidopsis thaliana transmembrane protein mRNA	transmembrane protein(AT5G02160)	coding protein	psRNATarget
AK118635.1	ncRNA:24   AUAUAUAUAUAUAUAUAUAAGUUA   1   |||||||||||||||||||*|||| targets:629   UAUAUAUAUAUAUAUAUAUACAAU   652 Target Full Sequence	1.5	Arabidopsis thaliana At5g02160 mRNA for unknown protein, complete cds, clone: RAFL19-90-D19	NA	coding protein	psRNATarget
AF325034.2	ncRNA:24   AUAUAUAUAUAUAUAUAUAAGUUA   1   |||||||||||||||||||*|||| targets:547   UAUAUAUAUAUAUAUAUAUACAAU   570 Target Full Sequence	1.5	Arabidopsis thaliana AT5g02160 (AT5g02160/T7H20_210) mRNA, complete cds	NA	coding protein	psRNATarget
NM_100324.3	ncRNA:24   AUAUAUAUAUAUAUAUAUAAGUUA   1   |=|=|||||||||||*|||||||| targets:527   UGUGUAUAUAUAUAUCUAUUCAAU   550 Target Full Sequence	1.5	Arabidopsis thaliana casein kinase like 13 (CKL13), mRNA	casein kinase like 13(CKL13)	coding protein	psRNATarget
BT002960.1	ncRNA:24   AUAUAUAUAUAUAUAUAUAAGUUA   1   |=|=|||||||||||*|||||||| targets:405   UGUGUAUAUAUAUAUCUAUUCAAU   428 Target Full Sequence	1.5	Arabidopsis thaliana clone RAFL15-05-B18 (R20295) putative casein kinase I (At1g04440) mRNA, complete cds	NA	coding protein	psRNATarget
BX826268.1	ncRNA:24   AUAUAUAUAUAUAUAUAUA-AGUUA   1   |||||||||||||||||||-||||| targets:686   UAUAUAUAUAUAUAUAUAUAUCAAU   710 Target Full Sequence	3.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL95ZD02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_202829.1	ncRNA:24   AUAUAUAUAUAUAUAUAUAA-GUUA   1   ||||||||||||||||||||-|||| targets:26   UAUAUAUAUAUAUAUAUAUUGCAAU   50 Target Full Sequence	3.0	Arabidopsis thaliana Carbohydrate-binding X8 domain superfamily protein mRNA	Carbohydrate-binding X8 domain superfamily protein(AT4G16165)	coding protein	psRNATarget