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BaseInfo

ncRNA ID	novel_ath_miR522
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr5:8652000-8652081 [+]
Reference genome	TAIR10
Source	ERR1337930;ERR973023;ERR973024;ERR973025;ERR973026
Length	22
Mature sequence(if miRNA)	1 - UUUUGAAGAAAUCGUCAGACGU - 22
Stem-loop(if miRNA)	--          A  GU    C  C      G       GG   UUUUGAAGAA UC  CAGA GU GUUGAA CUUUAAU  A   |||||||||| ||  |||| || |||||| |||||||   AGAACUUCUU AG  GUCU CG UAACUU GAAGUUA  U GA          C  UG    C  C      A       AA
Stem-loop sequence	UUUUGAAGAAAUCGUCAGACGUCGUUGAAGCUUUAAUGGAUAAAUUGAAGAUUCAAUCGCCUCUGGUGACUUCUUCAAGAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_100350.4	ncRNA:22   UGCAGACUGCUAAAGAAGUUUU   1   =*|||*||=||||||||||||| targets:2602   GGGUCAGAUGAUUUCUUCAAAA   2623 Target Full Sequence	2.0	Arabidopsis thaliana PB1 domain-containing protein tyrosine kinase mRNA	PB1 domain-containing protein tyrosine kinase(AT1G04700)	coding protein	psRNATarget
NM_001331493.1	ncRNA:22   UGCAGACUGCUAAAGAAGUUUU   1   =*|||*||=||||||||||||| targets:2420   GGGUCAGAUGAUUUCUUCAAAA   2441 Target Full Sequence	2.0	Arabidopsis thaliana PB1 domain-containing protein tyrosine kinase mRNA	PB1 domain-containing protein tyrosine kinase(AT1G04700)	coding protein	psRNATarget
NM_001331494.1	ncRNA:22   UGCAGACUGCUAAAGAAGUUUU   1   =*|||*||=||||||||||||| targets:2487   GGGUCAGAUGAUUUCUUCAAAA   2508 Target Full Sequence	2.0	Arabidopsis thaliana PB1 domain-containing protein tyrosine kinase partial mRNA	PB1 domain-containing protein tyrosine kinase(AT1G04700)	coding protein	psRNATarget
NM_001339516.1	ncRNA:22   UGCAGACUGCUAAAGAAGUUUU   1   =||*=|||=||||||||||||| targets:1732   GCGAUUGAUGAUUUCUUCAAAA   1753 Target Full Sequence	3.0	Arabidopsis thaliana glutamate receptor 3.6 (GLR3.6), mRNA	glutamate receptor 3.6(GLR3.6)	coding protein	psRNATarget
NM_115007.4	ncRNA:22   UGCAGACUGCUAAAGAAGUUUU   1   =||*=|||=||||||||||||| targets:1449   GCGAUUGAUGAUUUCUUCAAAA   1470 Target Full Sequence	3.0	Arabidopsis thaliana glutamate receptor 3.6 (GLR3.6), mRNA	glutamate receptor 3.6(GLR3.6)	coding protein	psRNATarget
BT004264.1	ncRNA:22   UGCAGACUGCUAAAGAAGUUUU   1   =||*=|||=||||||||||||| targets:1449   GCGAUUGAUGAUUUCUUCAAAA   1470 Target Full Sequence	3.0	Arabidopsis thaliana clone RAFL16-01-A05 (R20853) putative glutamate receptor (At3g51480) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001339518.1	ncRNA:22   UGCAGACUGCUAAAGAAGUUUU   1   =||*=|||=||||||||||||| targets:1025   GCGAUUGAUGAUUUCUUCAAAA   1046 Target Full Sequence	3.0	Arabidopsis thaliana glutamate receptor 3.6 (GLR3.6), mRNA	glutamate receptor 3.6(GLR3.6)	coding protein	psRNATarget
NM_001339517.1	ncRNA:22   UGCAGACUGCUAAAGAAGUUUU   1   =||*=|||=||||||||||||| targets:1449   GCGAUUGAUGAUUUCUUCAAAA   1470 Target Full Sequence	3.0	Arabidopsis thaliana glutamate receptor 3.6 (GLR3.6), mRNA	glutamate receptor 3.6(GLR3.6)	coding protein	psRNATarget
NM_114156.2	ncRNA:22   UGCAGACUGCUAAAGAAGUUUU   1   |=**||||=||||||||||||= targets:612   AUUGCUGAUGAUUUCUUCAAAG   633 Target Full Sequence	3.0	Arabidopsis thaliana Leucine-rich repeat protein kinase family protein (PRK3), mRNA	Leucine-rich repeat protein kinase family protein(PRK3)	coding protein	psRNATarget
DQ446723.1	ncRNA:22   UGCAGACUGCUAAAGAAGUUUU   1   |=**||||=||||||||||||= targets:388   AUUGCUGAUGAUUUCUUCAAAG   409 Target Full Sequence	3.0	Arabidopsis thaliana clone pENTR221-At3g42880 leucine-rich repeat transmembrane protein kinase (At3g42880) mRNA, complete cds	NA	coding protein	psRNATarget
FJ708731.1	ncRNA:22   UGCAGACUGCUAAAGAAGUUUU   1   |=**||||=||||||||||||= targets:388   AUUGCUGAUGAUUUCUUCAAAG   409 Target Full Sequence	3.0	Arabidopsis thaliana leucine-rich repeat receptor-like protein kinase (LRR-RLK) mRNA, partial cds	NA	coding protein	psRNATarget