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BaseInfo

ncRNA ID novel_ath_miR514
Species Arabidopsis thaliana
Class miRNA
Genome position Chr2:9584194-9584269 [+]
Reference genome TAIR10
Source SRR3178442
Length 21
Mature sequence(if miRNA) 56 - AUAUGGUUUGAAACUUUGCUU - 76
Stem-loop(if miRNA) --                        CGA   AUUA  U
  GCAAAGUUUCAAACCAUAUUCAUA   UUC    UG U
  ||||||||||||||||||||||||   |||    ||
  CGUUUCAAAGUUUGGUAUAAGUAU   AAG    AC A
UU                        --A   AACA  G
Stem-loop sequence GCAAAGUUUCAAACCAUAUUCAUACGAUUCAUUAUGUUAGCAACAAGAAAUAUGAAUAUGGUUUGAAACUUUGCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001341719.1
ncRNA:21   UUCGUUUCAAAGUUUGGUAUA   1
  |**||||||||||||||||||
targets:744   AUUCAAAGUUUCAAACCAUAU   764

1.0 Arabidopsis thaliana secE/sec61-gamma protein transport protein mRNA secE/sec61-gamma protein transport protein(AT4G24920) coding protein psRNATarget
NM_118624.4
ncRNA:21   UUCGUUUCAAAGUUUGGUAUA   1
  |**||||||||||||||||||
targets:595   AUUCAAAGUUUCAAACCAUAU   615

1.0 Arabidopsis thaliana secE/sec61-gamma protein transport protein mRNA secE/sec61-gamma protein transport protein(AT4G24920) coding protein psRNATarget