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BaseInfo

ncRNA ID ath-miR5653
Species Arabidopsis thaliana
Class miRNA
Genome position chr1:19026915-19027000 [-]
Reference genome TAIR10
Source miRBase
Length 24
Mature sequence(if miRNA) 1 - UGGGUUGAGUUGAGUUGAGUUGGC - 24
Stem-loop(if miRNA) C     --      -  UG      C     AUU     C  A
 CCAAU  AACUCA UU  ACCCAU AACUC   UGAGU AA A
 |||||  |||||| ||  |||||| |||||   ||||| || A
 GGUUG  UUGAGU GA  UGGGUA UUGGG   ACUCA UU A
C     AG      U  GU      C     AUU     A  U
Stem-loop sequence CCCAAUAACUCAUUUGACCCAUCAACUCAUUUGAGUCAAAAAAUUUAACUCAUUAGGGUUCAUGGGUUGAGUUGAGUUGAGUUGGC

Reference

1 PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis";
Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN;
Genome Res. 22:163-176(2012).