ncRNA ID | ath-miR5653 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr1:19026915-19027000 [-] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 1 - UGGGUUGAGUUGAGUUGAGUUGGC - 24 |
Stem-loop(if miRNA) |
C     --      -  UG      C     AUU     C  A  CCAAU  AACUCA UU  ACCCAU AACUC   UGAGU AA A  |||||  |||||| ||  |||||| |||||   ||||| || A  GGUUG  UUGAGU GA  UGGGUA UUGGG   ACUCA UU A C     AG      U  GU      C     AUU     A  U |
Stem-loop sequence | CCCAAUAACUCAUUUGACCCAUCAACUCAUUUGAGUCAAAAAAUUUAACUCAUUAGGGUUCAUGGGUUGAGUUGAGUUGAGUUGGC |
1 | PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012). |