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BaseInfo

ncRNA ID	novel_ath_miR487
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr4:9732976-9733028 [-]
Reference genome	TAIR10
Source	SRR3144592
Length	23
Mature sequence(if miRNA)	1 - GUUUGUGGAGCUUGACUGUUACA - 23
Stem-loop(if miRNA)	--C    AU    U      UG   GC    AACA  UCGG GUUCCA  AGC  A    ||||  |||| ||||||  |||  C    UUGU  AGUU CGAGGU  UUG  C ACA    -C    -      GU   AA
Stem-loop sequence	CAACAAUUCGGUGUUCCAUGAGCGCACCAAGUUUGUGGAGCUUGACUGUUACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT008326.1	ncRNA:23   ACAUUGUCAGUUCGAGGUGUUUG   1   *||*|*||||=|||||||||||| targets:317   GGUUAGAGUCGAGCUCCACAAAC   339 Target Full Sequence	2.5	Arabidopsis thaliana At5g24290 gene, complete cds	NA	coding protein	psRNATarget
AK228214.1	ncRNA:23   ACAUUGUCAGUUCGAGGUGUUUG   1   *||*|*||||=|||||||||||| targets:354   GGUUAGAGUCGAGCUCCACAAAC   376 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-66-J15	NA	coding protein	psRNATarget
BX831162.1	ncRNA:23   ACAUUGUCAGUUCGAGGUGUUUG   1   *||*|*||||=|||||||||||| targets:488   GGUUAGAGUCGAGCUCCACAAAC   510 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS63ZA08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AK317370.1	ncRNA:23   ACAUUGUCAGUUCGAGGUGUUUG   1   *||*|*||||=|||||||||||| targets:432   GGUUAGAGUCGAGCUCCACAAAC   454 Target Full Sequence	2.5	Arabidopsis thaliana AT5G24290 mRNA, complete cds, clone: RAFL23-26-G05	NA	coding protein	psRNATarget
NM_122335.4	ncRNA:23   ACAUUGUCAGUUCGAGGUGUUUG   1   *||*|*||||=|||||||||||| targets:438   GGUUAGAGUCGAGCUCCACAAAC   460 Target Full Sequence	2.5	Arabidopsis thaliana Vacuolar iron transporter (VIT) family protein (MEB2), mRNA	Vacuolar iron transporter (VIT) family protein(MEB2)	coding protein	psRNATarget
AY086399.1	ncRNA:23   ACAUUGUCAGUUCGAGGUGUUUG   1   *||*|*||||=|||||||||||| targets:484   GGUUAGAGUCGAGCUCCACAAAC   506 Target Full Sequence	2.5	Arabidopsis thaliana clone 249388 mRNA, complete sequence	NA	coding protein	psRNATarget
NM_180736.3	ncRNA:23   ACAUUGUCAGUUCGAGGUGUUUG   1   *||*|*||||=|||||||||||| targets:495   GGUUAGAGUCGAGCUCCACAAAC   517 Target Full Sequence	2.5	Arabidopsis thaliana Vacuolar iron transporter (VIT) family protein (MEB2), mRNA	Vacuolar iron transporter (VIT) family protein(MEB2)	coding protein	psRNATarget
DQ447098.1	ncRNA:23   ACAUUGUCAGUUCGAGGUGUUUG   1   |*|||=||*|||||||||||||= targets:79   UUUAAUAGCCAAGCUCCACAAAU   101 Target Full Sequence	3.0	Arabidopsis thaliana clone pENTR221-At5g60810 hypothetical protein (At5g60810) mRNA, complete cds	NA	coding protein	psRNATarget
DQ653385.1	ncRNA:23   ACAUUGUCAGUUCGAGGUGUUUG   1   |*|||=||*|||||||||||||= targets:79   UUUAAUAGCCAAGCUCCACAAAU   101 Target Full Sequence	3.0	Arabidopsis thaliana clone 0000011774_0000008526 unknown mRNA	NA	coding protein	psRNATarget
AB568259.1	ncRNA:23   ACAUUGUCAGUUCGAGGUGUUUG   1   |*|||=||*|||||||||||||= targets:79   UUUAAUAGCCAAGCUCCACAAAU   101 Target Full Sequence	3.0	Arabidopsis thaliana RGF1 mRNA for root meristem growth factor 1, complete cds	NA	coding protein	psRNATarget
NM_125474.4	ncRNA:23   ACAUUGUCAGUUCGAGGUGUUUG   1   |*|||=||*|||||||||||||= targets:148   UUUAAUAGCCAAGCUCCACAAAU   170 Target Full Sequence	3.0	Arabidopsis thaliana root meristem growth factor 1 (RGF1), mRNA	root meristem growth factor 1(RGF1)	coding protein	psRNATarget