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BaseInfo

ncRNA ID novel_ath_miR480
Species Arabidopsis thaliana
Class miRNA
Genome position Chr3:8873710-8873792 [-]
Reference genome TAIR10
Source SRR3048748
Length 21
Mature sequence(if miRNA) 63 - UUCAUCACUUUGUUUUCGGUU - 83
Stem-loop(if miRNA) --     C   U       G       -A   A  -     G
  UUCAU ACU UGUUUUC GUUAUAA  UAA AC AAUGC A
  ||||| ||| ||||||| |||||||  ||| || ||||| U
  GAGUA UGG ACAAAAG CGAUGUU  AUU UG UUAUG A
UU     U   C       A       CC   A  A     U
Stem-loop sequence UUCAUCACUUUGUUUUCGGUUAUAAAUAAAACAAUGCGAUAUGUAUUAGUAUUACCUUGUAGCAGAAAACACGGUUAUGAGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001331877.1
ncRNA:21   UUGG-CUUUUGUUUCACUACUU   1
  *|||-||=||||||||||||||
targets:884   CACCAGAGAACAAAGUGAUGAA   905

3.0 Arabidopsis thaliana amino acid permease 8 (AAP8), mRNA amino acid permease 8(AAP8) coding protein psRNATarget
NM_100875.1
ncRNA:21   UUGG-CUUUUGUUUCACUACUU   1
  *|||-||=||||||||||||||
targets:794   CACCAGAGAACAAAGUGAUGAA   815

3.0 Arabidopsis thaliana amino acid permease 8 (AAP8), partial mRNA amino acid permease 8(AAP8) coding protein psRNATarget