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BaseInfo

ncRNA ID	novel_ath_miR478
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr4:11253072-11253235 [-]
Reference genome	TAIR10
Source	ERR1337929;SRR3048749
Length	24
Mature sequence(if miRNA)	1 - UCAACGUUUUCUUGAACAUGUAAG - 24
Stem-loop(if miRNA)	--        A        AA       C  A   CUG    -        -----C      -       CA    G    -   A   UACAUGUU AAGAGAAC  UGAGUUU UU GAU   UUUG UGUUUCUU      CUCUUC UGAAAUU  UGGU AUAU GGU A   |||||||| ||||||||  ||||||| || |||   |||| ||||||||      |||||| |||||||  |||| |||| |||   AUGUACAA UUCUUUUG  ACUCAAA AA CUA   AAAC ACAAAGAA      GAGAAG ACUUUAA  ACCG UAUA CCA U GA        G        CA       C  C   -AA    C        AAAGAA      G       CC    -    A   A
Stem-loop sequence	UACAUGUUAAAGAGAACAAUGAGUUUCUUAGAUCUGUUUGUGUUUCUUCCUCUUCUGAAAUUCAUGGUGAUAUGGUAAUAACCAAUAUGCCACCAAUUUCAGGAAGAGAAGAAAAAGAAACACCAAAAAAUCCAACAAACUCAACGUUUUCUUGAACAUGUAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_118226.1	ncRNA:24   GA-AUGUACAAGUUCUUUUGCAACU   1   ||-||-|||||||||||||||||*| targets:306   CUCUA-AUGUUCAAGAAAACGUUCA   329 Target Full Sequence	1.5	Arabidopsis thaliana Dof-type zinc finger domain-containing protein (DOF4.5), partial mRNA	Dof-type zinc finger domain-containing protein(DOF4.5)	coding protein	psRNATarget
NM_129746.3	ncRNA:24   GAAUGUACAAGUUCUUUUGCAACU   1   *||=-|||||*|||||||=||||| targets:2137   GUUG-AUGUUGAAGAAAAUGUUGA   2159 Target Full Sequence	2.5	Arabidopsis thaliana Leucine-rich repeat protein kinase family protein mRNA	Leucine-rich repeat protein kinase family protein(AT2G41820)	coding protein	psRNATarget
AK228301.1	ncRNA:24   GAAUGUACAAGUUCUUUUGCAACU   1   *||=-|||||*|||||||=||||| targets:2137   GUUG-AUGUUGAAGAAAAUGUUGA   2159 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for putative receptor-like protein kinase, complete cds, clone: RAFL14-73-O04	NA	coding protein	psRNATarget
FJ708712.1	ncRNA:24   GAAUGUACAAGUUCUUUUGCAACU   1   *||=-|||||*|||||||=||||| targets:1711   GUUG-AUGUUGAAGAAAAUGUUGA   1733 Target Full Sequence	2.5	Arabidopsis thaliana leucine-rich repeat receptor-like protein kinase (LRR-RLK) mRNA, partial cds	NA	coding protein	psRNATarget
AK176378.1	ncRNA:24   GAAUGUACAAGUUCUUUUGCAACU   1   =**|==||||*||||||||||||= targets:738   UCGAUGUGUUGAAGAAAACGUUGG   761 Target Full Sequence	3.0	Arabidopsis thaliana mRNA for cytokinin oxidase (CKX6), complete cds, clone: RAFL24-08-K03	NA	coding protein	psRNATarget
NM_106199.5	ncRNA:24   GAAUGUACAAGUUCUUUUGCAACU   1   =**|==||||*||||||||||||= targets:738   UCGAUGUGUUGAAGAAAACGUUGG   761 Target Full Sequence	3.0	Arabidopsis thaliana cytokinin oxidase 5 (CKX5), mRNA	cytokinin oxidase 5(CKX5)	coding protein	psRNATarget
NM_001198473.1	ncRNA:24   GAAUGUACAAGUUCUUUUGCAACU   1   =**|==||||*||||||||||||= targets:751   UCGAUGUGUUGAAGAAAACGUUGG   774 Target Full Sequence	3.0	Arabidopsis thaliana cytokinin oxidase 5 (CKX5), mRNA	cytokinin oxidase 5(CKX5)	coding protein	psRNATarget
BX816442.1	ncRNA:24   GAAUGUACAAGUUCUUUUGCAACU   1   =**|==||||*||||||||||||= targets:508   UCGAUGUGUUGAAGAAAACGUUGG   531 Target Full Sequence	3.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH48ZF03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AF303982.1	ncRNA:24   GAAUGUACAAGUUCUUUUGCAACU   1   =**|==||||*||||||||||||= targets:440   UCGAUGUGUUGAAGAAAACGUUGG   463 Target Full Sequence	3.0	Arabidopsis thaliana cytokinin oxidase (CKX6) mRNA, complete cds	NA	coding protein	psRNATarget