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BaseInfo

ncRNA ID	novel_ath_miR475
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr5:20773181-20773230 [-]
Reference genome	TAIR10
Source	SRR3048748
Length	24
Mature sequence(if miRNA)	27 - AAAUUUACAAAUUGAUUCCUGGCC - 50
Stem-loop(if miRNA)	--     UA  AA        -      AAAUU  CA  UUGAUUCC UGGC   |||||  ||  |||||||| |||C   UUUAG  GU  AAUUAAGG ACCA CG     GC  AC        G
Stem-loop sequence	AAAUUUACAAAUUGAUUCCUGGCCACCAGGGAAUUAACAUGCGGAUUUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY085549.1	ncRNA:24   CCGGUCCUUA-GUUAAACAUUUAAA   1   *||*||||||-=||||||||||||| targets:944   UGCAAGGAAUAUAAUUUGUAAAUUU   968 Target Full Sequence	3.0	Arabidopsis thaliana clone 156940 mRNA, complete sequence	NA	coding protein	psRNATarget
NM_001337393.1	ncRNA:24   CCGGUCCUUA-GUUAAACAUUUAAA   1   *||*||||||-=||||||||||||| targets:1084   UGCAAGGAAUAUAAUUUGUAAAUUU   1108 Target Full Sequence	3.0	Arabidopsis thaliana RING/U-box superfamily protein mRNA	RING/U-box superfamily protein(AT3G02290)	coding protein	psRNATarget
AK221581.1	ncRNA:24   CCGGUCCUUA-GUUAAACAUUUAAA   1   *||*||||||-=||||||||||||| targets:1258   UGCAAGGAAUAUAAUUUGUAAAUUU   1282 Target Full Sequence	3.0	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-83-N21	NA	coding protein	psRNATarget
NM_001337397.1	ncRNA:24   CCGGUCCUUA-GUUAAACAUUUAAA   1   *||*||||||-=||||||||||||| targets:1333   UGCAAGGAAUAUAAUUUGUAAAUUU   1357 Target Full Sequence	3.0	Arabidopsis thaliana RING/U-box superfamily protein mRNA	RING/U-box superfamily protein(AT3G02290)	coding protein	psRNATarget
NM_111096.4	ncRNA:24   CCGGUCCUUA-GUUAAACAUUUAAA   1   *||*||||||-=||||||||||||| targets:1444   UGCAAGGAAUAUAAUUUGUAAAUUU   1468 Target Full Sequence	3.0	Arabidopsis thaliana RING/U-box superfamily protein mRNA	RING/U-box superfamily protein(AT3G02290)	coding protein	psRNATarget
BX822335.1	ncRNA:24   CCGGUCCUUA-GUUAAACAUUUAAA   1   *||*||||||-=||||||||||||| targets:1650   UGCAAGGAAUAUAAUUUGUAAAUUU   1674 Target Full Sequence	3.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB2ZA08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_001337396.1	ncRNA:24   CCGGUCCUUA-GUUAAACAUUUAAA   1   *||*||||||-=||||||||||||| targets:1662   UGCAAGGAAUAUAAUUUGUAAAUUU   1686 Target Full Sequence	3.0	Arabidopsis thaliana RING/U-box superfamily protein mRNA	RING/U-box superfamily protein(AT3G02290)	coding protein	psRNATarget
NM_001337395.1	ncRNA:24   CCGGUCCUUA-GUUAAACAUUUAAA   1   *||*||||||-=||||||||||||| targets:1631   UGCAAGGAAUAUAAUUUGUAAAUUU   1655 Target Full Sequence	3.0	Arabidopsis thaliana RING/U-box superfamily protein mRNA	RING/U-box superfamily protein(AT3G02290)	coding protein	psRNATarget
NM_001337394.1	ncRNA:24   CCGGUCCUUA-GUUAAACAUUUAAA   1   *||*||||||-=||||||||||||| targets:1730   UGCAAGGAAUAUAAUUUGUAAAUUU   1754 Target Full Sequence	3.0	Arabidopsis thaliana RING/U-box superfamily protein mRNA	RING/U-box superfamily protein(AT3G02290)	coding protein	psRNATarget