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BaseInfo

ncRNA ID	novel_ath_miR457
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr3:9878207-9878336 [-]
Reference genome	TAIR10
Source	SRR2391663;ERR654971;SRR1266862
Length	21
Mature sequence(if miRNA)	110 - UAGCCAAGGAUGACUUGCCUG - 130
Stem-loop(if miRNA)	--          U    U     -UU    ----            GUUAGUG    -      CAA     U   UAGCCAAGGA GACU GCCUG   UCUU    UGAGUAAAAUGG       UCAU GUUUGA   GUGAC A   |||||||||| |||| |||||   ||||    ||||||||||||       |||| ||||||   ||||| U   AUCGGUUCCU CUGA CGGAC   AGAA    ACUCAUUUUACC       AGUA CGAACU   UAUUG A CU          -    -     UAC    AACU            -------    A      --A     A
Stem-loop sequence	UAGCCAAGGAUGACUUGCCUGUUUCUUUGAGUAAAAUGGGUUAGUGUCAUGUUUGACAAGUGACUAUAAGUUAUAUCAAGCAAUGACCAUUUUACUCAUCAAAAGACAUCAGGCAGUCUCCUUGGCUAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001338098.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   *|||*|||||||||||||||| targets:1271   AAGGGAAGUCAUCCUUGGCUA   1291 Target Full Sequence	1.0	Arabidopsis thaliana nuclear factor Y, subunit A6 (NF-YA6), mRNA	nuclear factor Y, subunit A6(NF-YA6)	coding protein	psRNATarget
NM_112256.3	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   *|||*|||||||||||||||| targets:1624   AAGGGAAGUCAUCCUUGGCUA   1644 Target Full Sequence	1.0	Arabidopsis thaliana nuclear factor Y, subunit A6 (NF-YA6), mRNA	nuclear factor Y, subunit A6(NF-YA6)	coding protein	psRNATarget
AY140028.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   *=||*|||||||||||||||| targets:1258   AGGGGAAGUCAUCCUUGGCUA   1278 Target Full Sequence	1.0	Arabidopsis thaliana CCAAT-binding factor B subunit-like protein, putative (At1g72830) mRNA, complete cds	NA	coding protein	psRNATarget
Y13722.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   *=||*|||||||||||||||| targets:1319   AGGGGAAGUCAUCCUUGGCUA   1339 Target Full Sequence	1.0	Arabidopsis thaliana mRNA for Hap2c transcription factor	NA	coding protein	psRNATarget
NM_001334553.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   *=||*|||||||||||||||| targets:1368   AGGGGAAGUCAUCCUUGGCUA   1388 Target Full Sequence	1.0	Arabidopsis thaliana nuclear factor Y, subunit A3 (NF-YA3), mRNA	nuclear factor Y, subunit A3(NF-YA3)	coding protein	psRNATarget
AY057539.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   *=||*|||||||||||||||| targets:1487   AGGGGAAGUCAUCCUUGGCUA   1507 Target Full Sequence	1.0	Arabidopsis thaliana At1g72830/F3N23_3 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001036195.5	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   *=||*|||||||||||||||| targets:1413   AGGGGAAGUCAUCCUUGGCUA   1433 Target Full Sequence	1.0	Arabidopsis thaliana nuclear factor Y, subunit A3 (NF-YA3), mRNA	nuclear factor Y, subunit A3(NF-YA3)	coding protein	psRNATarget
NM_105941.8	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   *=||*|||||||||||||||| targets:1741   AGGGGAAGUCAUCCUUGGCUA   1761 Target Full Sequence	1.0	Arabidopsis thaliana nuclear factor Y, subunit A3 (NF-YA3), mRNA	nuclear factor Y, subunit A3(NF-YA3)	coding protein	psRNATarget
BX813919.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   *|||*|||||||||||||||= targets:1199   AAGGGAAGUCAUCCUUGGCUG   1219 Target Full Sequence	2.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB47ZG01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AY088950.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   *|||*|||||||||||||||= targets:1232   AAGGGAAGUCAUCCUUGGCUG   1252 Target Full Sequence	2.0	Arabidopsis thaliana clone 106674 mRNA, complete sequence	NA	coding protein	psRNATarget
NM_202121.2	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   *|||*|||||||||||||||= targets:1305   AAGGGAAGUCAUCCUUGGCUG   1325 Target Full Sequence	2.0	Arabidopsis thaliana nuclear factor Y, subunit A8 (NF-YA8), mRNA	nuclear factor Y, subunit A8(NF-YA8)	coding protein	psRNATarget
NM_101621.3	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   *|||*|||||||||||||||= targets:1319   AAGGGAAGUCAUCCUUGGCUG   1339 Target Full Sequence	2.0	Arabidopsis thaliana nuclear factor Y, subunit A8 (NF-YA8), mRNA	nuclear factor Y, subunit A8(NF-YA8)	coding protein	psRNATarget
NM_001198095.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   *|||*|||||||||||||||= targets:1505   AAGGGAAGUCAUCCUUGGCUG   1525 Target Full Sequence	2.0	Arabidopsis thaliana nuclear factor Y, subunit A8 (NF-YA8), mRNA	nuclear factor Y, subunit A8(NF-YA8)	coding protein	psRNATarget
BX815988.1	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   *|||*|||||||||||||||= targets:1623   AAGGGAAGUCAUCCUUGGCUG   1643 Target Full Sequence	2.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH20ZH03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_202122.2	ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1   *|||*|||||||||||||||= targets:1661   AAGGGAAGUCAUCCUUGGCUG   1681 Target Full Sequence	2.0	Arabidopsis thaliana nuclear factor Y, subunit A8 (NF-YA8), mRNA	nuclear factor Y, subunit A8(NF-YA8)	coding protein	psRNATarget