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BaseInfo

ncRNA ID	novel_ath_miR446
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr2:11302370-11302480 [-]
Reference genome	TAIR10
Source	SRR2391659
Length	21
Mature sequence(if miRNA)	91 - UCUAUGAGAGAUUUCGAAGAC - 111
Stem-loop(if miRNA)	--                      C             -UA    AA    UG  A   UCUAUGAGAGAUUUCGAAGACA UUGUCAUUCACUA   UUAA  UACU  AA U   |||||||||||||||||||||| |||||||||||||   ||||  ||||  ||   AGAUGCUCUCUGAAGCUUCUGU AACAGUAAGUGAU   AGUU  AUGA  UU U AU                      A             UAA    AA    GU  A
Stem-loop sequence	UCUAUGAGAGAUUUCGAAGACACUUGUCAUUCACUAUAUUAAAAUACUUGAAAUUAUUUGAGUAAAUUGAAAUUAGUGAAUGACAAAUGUCUUCGAAGUCUCUCGUAGAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_100477.4	ncRNA:21   CAGAAGCUUUAGAGAGUAUCU   1   *|||||||||||||||||*|| targets:2232   CUCUUCGAAAUCUCUCAUUGA   2252 Target Full Sequence	1.5	Arabidopsis thaliana ARM repeat superfamily protein mRNA	ARM repeat superfamily protein(AT1G05960)	coding protein	psRNATarget
NM_001160836.1	ncRNA:21   CAGAAGCUUUAGAGAGUAUCU   1   *|||||||||||||||||*|| targets:2192   CUCUUCGAAAUCUCUCAUUGA   2212 Target Full Sequence	1.5	Arabidopsis thaliana ARM repeat superfamily protein mRNA	ARM repeat superfamily protein(AT1G05960)	coding protein	psRNATarget
NM_001331608.1	ncRNA:21   CAGAAGCUUUAGAGAGUAUCU   1   *|||||||||||||||||*|| targets:2164   CUCUUCGAAAUCUCUCAUUGA   2184 Target Full Sequence	1.5	Arabidopsis thaliana ARM repeat superfamily protein mRNA	ARM repeat superfamily protein(AT1G05960)	coding protein	psRNATarget
NM_001331609.1	ncRNA:21   CAGAAGCUUUAGAGAGUAUCU   1   *|||||||||||||||||*|| targets:2081   CUCUUCGAAAUCUCUCAUUGA   2101 Target Full Sequence	1.5	Arabidopsis thaliana ARM repeat superfamily protein mRNA	ARM repeat superfamily protein(AT1G05960)	coding protein	psRNATarget
AF367291.1	ncRNA:21   CAGAAGCUUUAGAGAGUAUCU   1   *|||||||||||||||||*|| targets:2129   CUCUUCGAAAUCUCUCAUUGA   2149 Target Full Sequence	1.5	Arabidopsis thaliana At1g05960/T21E18_20 mRNA, complete cds	NA	coding protein	psRNATarget
BX816296.1	ncRNA:21   CAGAAGCUUUAGAGAGUAUCU   1   *|||||||||||||||||*|| targets:2047   CUCUUCGAAAUCUCUCAUUGA   2067 Target Full Sequence	1.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH3ZC08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BT002245.1	ncRNA:21   CAGAAGCUUUAGAGAGUAUCU   1   *|||||||||||||||||*|| targets:1961   CUCUUCGAAAUCUCUCAUUGA   1981 Target Full Sequence	1.5	Arabidopsis thaliana At1g05960/T21E18_20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_117991.3	ncRNA:21   CAGAAGCUUUAGAGAGUAUCU   1   ***||||||||||||||*||| targets:503   UGAUUCGAAAUCUCUCAAAGA   523 Target Full Sequence	2.5	Arabidopsis thaliana Pentatricopeptide repeat (PPR) superfamily protein (DOT4), mRNA	Pentatricopeptide repeat (PPR) superfamily protein(DOT4)	coding protein	psRNATarget