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BaseInfo

ncRNA ID novel_ath_miR442
Species Arabidopsis thaliana
Class miRNA
Genome position Chr1:14255791-14255867 [+]
Reference genome TAIR10
Source SRR2391658
Length 24
Mature sequence(if miRNA) 1 - AUCUUUGUAUGCAUAGCUUGGGAC - 24
Stem-loop(if miRNA) --                                   A
  AUCUUUGUAUGCAUAGCUUGGGACUUACCUUUAGU G
  ||||||||||||||||||||||||||||||||||| A
  UAGAGACAUACGUAUCGAACCCUGAAUGGAAAUCG A
AA                                   U
Stem-loop sequence AUCUUUGUAUGCAUAGCUUGGGACUUACCUUUAGUAGAAUGCUAAAGGUAAGUCCCAAGCUAUGCAUACAGAGAUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK230139.1
ncRNA:24   CAGGGUUCGAUACGUAUGUUUCUA   1
  ||||||||=||||||||||=||||
targets:44   GUCCCAAGUUAUGCAUACAGAGAU   67

2.5 Arabidopsis thaliana mRNA for hypothetical protein, clone: RAFL22-82-O04 NA coding protein psRNATarget
EF183005.1
ncRNA:24   CAGGGUUCGAUACGUAUGUUUCUA   1
  |||||||*|||||||||||=||||
targets:2664   GUCCCAAUCUAUGCAUACAGAGAU   2687

2.5 Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence NA coding protein psRNATarget