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BaseInfo

ncRNA ID	novel_ath_miR428
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr5:8958576-8958690 [+]
Reference genome	TAIR10
Source	ERR1337928
Length	21
Mature sequence(if miRNA)	95 - UAUGGAUGUAUGCAUGAAUGC - 115
Stem-loop(if miRNA)	----AU          G    A      AAA          G    G  G        A       GUGUAUGCAU UAUG AUGUAU   AUGUAUGCAU UAUG AU UAUGCAUG A       |||||||||| |||| ||||||   |||||||||| |||| || ||||||||       UACGUAUGUA GUAU UACGUA   UACGUAUGUA GUAU UA GUAUGUAC U CGUAAG          G    G      -AG          G    G  G        G
Stem-loop sequence	AUGUGUAUGCAUGUAUGAAUGUAUAAAAUGUAUGCAUGUAUGGAUGUAUGCAUGAAUGCAUGUAUGGAUGUAUGGAUGUAUGCAUGAAUGCAUGUAUGGAUGUAUGCAUGAAUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001343946.1	ncRNA:21   CGUAAGUACGUAUGUAGGUAU   1   ||||||||||||||||||||| targets:835   GCAUUCAUGCAUACAUCCAUA   855 Target Full Sequence	0.0	Arabidopsis thaliana hypothetical protein mRNA	hypothetical protein(AT5G25755)	coding protein	psRNATarget
NM_001343946.1	ncRNA:21   CGUAAGUACGUAUGUAGGUAU   1   ||||||||||||||||||||| targets:859   GCAUUCAUGCAUACAUCCAUA   879 Target Full Sequence	0.0	Arabidopsis thaliana hypothetical protein mRNA	hypothetical protein(AT5G25755)	coding protein	psRNATarget
NM_001343946.1	ncRNA:21   CGUAAGUACGUAUGUAGGUAU   1   ||||||||||||||||||||| targets:883   GCAUUCAUGCAUACAUCCAUA   903 Target Full Sequence	0.0	Arabidopsis thaliana hypothetical protein mRNA	hypothetical protein(AT5G25755)	coding protein	psRNATarget
NM_001343946.1	ncRNA:21   CGUAAGUACGUAUGUAGGUAU   1   ||||||||||||||||||||| targets:907   GCAUUCAUGCAUACAUCCAUA   927 Target Full Sequence	0.0	Arabidopsis thaliana hypothetical protein mRNA	hypothetical protein(AT5G25755)	coding protein	psRNATarget
NM_001343945.1	ncRNA:21   CGUAAGUACGUAUGUAGGUAU   1   ||||||||||||||||||||| targets:861   GCAUUCAUGCAUACAUCCAUA   881 Target Full Sequence	0.0	Arabidopsis thaliana hypothetical protein mRNA	hypothetical protein(AT5G25755)	coding protein	psRNATarget
NM_001343945.1	ncRNA:21   CGUAAGUACGUAUGUAGGUAU   1   ||||||||||||||||||||| targets:885   GCAUUCAUGCAUACAUCCAUA   905 Target Full Sequence	0.0	Arabidopsis thaliana hypothetical protein mRNA	hypothetical protein(AT5G25755)	coding protein	psRNATarget
NM_001343945.1	ncRNA:21   CGUAAGUACGUAUGUAGGUAU   1   ||||||||||||||||||||| targets:909   GCAUUCAUGCAUACAUCCAUA   929 Target Full Sequence	0.0	Arabidopsis thaliana hypothetical protein mRNA	hypothetical protein(AT5G25755)	coding protein	psRNATarget
NM_001343945.1	ncRNA:21   CGUAAGUACGUAUGUAGGUAU   1   ||||||||||||||||||||| targets:933   GCAUUCAUGCAUACAUCCAUA   953 Target Full Sequence	0.0	Arabidopsis thaliana hypothetical protein mRNA	hypothetical protein(AT5G25755)	coding protein	psRNATarget
NM_001344266.1	ncRNA:21   CGUAAGUACGUAUGUAGGUAU   1   *|||||||||||||||=|||| targets:733   ACAUUCAUGCAUACAUUCAUA   753 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein partial mRNA	hypothetical protein(AT5G38747)	coding protein	psRNATarget
NM_001344266.1	ncRNA:21   CGUAAGUACGUAUGUAGGUAU   1   *|||*|||||||||||=|||| targets:785   ACAUGCAUGCAUACAUUCAUA   805 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein partial mRNA	hypothetical protein(AT5G38747)	coding protein	psRNATarget
NM_001344266.1	ncRNA:21   CGUAAGUACGUAUGUAGGUAU   1   *|||*|||||||||||=|||| targets:833   CCAUACAUGCAUACAUUCAUA   853 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein partial mRNA	hypothetical protein(AT5G38747)	coding protein	psRNATarget
NM_001344266.1	ncRNA:21   CGUAAGUACGUAUGUAGGUAU   1   ||||*|||*|||||||||||| targets:713   GCAUACAUUCAUACAUCCAUA   733 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein partial mRNA	hypothetical protein(AT5G38747)	coding protein	psRNATarget
NM_001344266.1	ncRNA:21   CGUAAGUACGUAUGUAGGUAU   1   *|||*|||*|||||||||||| targets:765   UCAUACAUUCAUACAUCCAUA   785 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein partial mRNA	hypothetical protein(AT5G38747)	coding protein	psRNATarget
NM_001343291.1	ncRNA:21   CGUAAGUACGUAUGUAGGUAU   1   *=||*=||||||||||||||* targets:137   AUAUAUAUGCAUACAUCCAUC   157 Target Full Sequence	3.0	Arabidopsis thaliana zinc induced facilitator 1 (ZIF1), mRNA	zinc induced facilitator 1(ZIF1)	coding protein	psRNATarget
NM_121377.5	ncRNA:21   CGUAAGUACGUAUGUAGGUAU   1   *=||*=||||||||||||||* targets:128   AUAUAUAUGCAUACAUCCAUC   148 Target Full Sequence	3.0	Arabidopsis thaliana zinc induced facilitator 1 (ZIF1), mRNA	zinc induced facilitator 1(ZIF1)	coding protein	psRNATarget