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BaseInfo

ncRNA ID novel_ath_miR409
Species Arabidopsis thaliana
Class miRNA
Genome position Chr5:14028227-14028445 [+]
Reference genome TAIR10
Source SRR2145250
Length 21
Mature sequence(if miRNA) 199 - UAUUGGAUUCAUUGCUAACUU - 219
Stem-loop(if miRNA) --    A           U   U     -A    AC   C   A    -AG      CC               U              -UG  -           A  AUC
  GUUG CAAUGAAUCCA UAA UAUCA  UUGA  UUC UGU UAUG   UUUUCU  AUAACUAGUAAUAAU UGAUAGAUUUGACU   AC UACUUCAUUUU UU   U
  |||| ||||||||||| ||| |||||  ||||  ||| ||| ||||   ||||||  ||||||||||||||| ||||||||||||||   || ||||||||||| ||
  CAAU GUUACUUAGGU AUU AUAGU  AACU  AAG ACA AUAC   AAAAGA  UAUUGAUCAUUAUUA AUUAUCUAAACUGA   UG AUGAAGUAAGA AA   U
UU    C           U   U     CA    -A   A   A    GAA      UC               U              UUA  U           A  CCG
Stem-loop sequence GUUGACAAUGAAUCCAUUAAUUAUCAAUUGAACUUCCUGUAUAUGAGUUUUCUCCAUAACUAGUAAUAAUUUGAUAGAUUUGACUUGACUACUUCAUUUUAUUAUCUUGCCAAAAGAAUGAAGUAUGUAUUAGUCAAAUCUAUUAUAUUAUUACUAGUUAUCUAGAAAAAAGCAUAAACAAGAAAUCAAACUGAUAUUUAUUGGAUUCAUUGCUAACUU