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BaseInfo

ncRNA ID	novel_ath_miR396
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr5:2634934-2635016 [-]
Reference genome	TAIR10
Source	SRR2135661;ERR1337946
Length	21
Mature sequence(if miRNA)	1 - UCGAUAAACCUCUGCAUCCAG - 21
Stem-loop(if miRNA)	--   G    C    C        C   C   GAAC    U   GGA GCAG GGUU AUCGAUCU UUC UGU    ACAU A   ||| |||| |||| |||||||| ||| |||    |||| A   CCU CGUC CCAA UAGCUAGA AAG ACG    UGUA A GA   A    U    A        U   U   AAAA    A
Stem-loop sequence	GGAGGCAGCGGUUCAUCGAUCUCUUCCUGUGAACACAUUAAAAAUGUAAAAGCAUGAAUAGAUCGAUAAACCUCUGCAUCCAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AF187317.1	ncRNA:21   GACCUACGUCUCCA-AAUAGCU   1   ||||||||||||||-||||||| targets:3058   CUGGAUGCAGAGGUAUUAUCGA   3079 Target Full Sequence	3.0	Arabidopsis thaliana CAF protein (CAF) mRNA, complete cds	NA	coding protein	psRNATarget
AF292940.1	ncRNA:21   GACCUACGUCUCCA-AAUAGCU   1   ||||||||||||||-||||||| targets:3422   CUGGAUGCAGAGGUAUUAUCGA   3443 Target Full Sequence	3.0	Arabidopsis thaliana short integuments 1 (SIN1) mRNA, complete cds	NA	coding protein	psRNATarget
NM_099986.4	ncRNA:21   GACCUACGUCUCCA-AAUAGCU   1   ||||||||||||||-||||||| targets:3447   CUGGAUGCAGAGGUAUUAUCGA   3468 Target Full Sequence	3.0	Arabidopsis thaliana dicer-like 1 (DCL1), mRNA	dicer-like 1(DCL1)	coding protein	psRNATarget