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BaseInfo

ncRNA ID	novel_ath_miR393
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr5:400403-400485 [+]
Reference genome	TAIR10
Source	SRR2135661
Length	21
Mature sequence(if miRNA)	1 - UAAUCUGCAUCCUGAGGUUUA - 21
Stem-loop(if miRNA)	--   U   C         U      CCAAUUAA  A       AU   UAA CUG AUCCUGAGG UUAAAA        GC UAUACAU  G   ||| ||| ||||||||| ||||||        || |||||||   AUU GAC UAGGGCUCC AAUUUU        UG AUAUGUA  C CC   U   A         U      --------  -       AG
Stem-loop sequence	UAAUCUGCAUCCUGAGGUUUAAAACCAAUUAAGCAUAUACAUAUGCGAAUGUAUAGUUUUUAAUCCUCGGGAUACAGUUUACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_113629.3	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   *||||||*||||||||||||| targets:361   GAAACCUAAGGAUGCAGAUUA   381 Target Full Sequence	1.0	Arabidopsis thaliana Galactose oxidase/kelch repeat superfamily protein mRNA	Galactose oxidase/kelch repeat superfamily protein(AT3G27150)	coding protein	psRNATarget
NM_001338859.1	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   *||||||*||||||||||||| targets:368   GAAACCUAAGGAUGCAGAUUA   388 Target Full Sequence	1.0	Arabidopsis thaliana Galactose oxidase/kelch repeat superfamily protein mRNA	Galactose oxidase/kelch repeat superfamily protein(AT3G27150)	coding protein	psRNATarget
BT008476.1	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   |=|||=|||||*||||||||| targets:1143   UGAACUUCAGGUUGCAGAUUA   1163 Target Full Sequence	2.5	Arabidopsis thaliana At1g07010 gene, complete cds	NA	coding protein	psRNATarget
BX815035.1	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   |=|||=|||||*||||||||| targets:1139   UGAACUUCAGGUUGCAGAUUA   1159 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS26ZE01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AY136428.1	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   |=|||=|||||*||||||||| targets:1153   UGAACUUCAGGUUGCAGAUUA   1173 Target Full Sequence	2.5	Arabidopsis thaliana unknown protein (At1g07010) mRNA, complete cds	NA	coding protein	psRNATarget
BX815748.1	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   |=|||=|||||*||||||||| targets:1218   UGAACUUCAGGUUGCAGAUUA   1238 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS90ZA04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AY079027.1	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   |=|||=|||||*||||||||| targets:1205   UGAACUUCAGGUUGCAGAUUA   1225 Target Full Sequence	2.5	Arabidopsis thaliana At1g07010/F10K1_19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001160844.1	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   |=|||=|||||*||||||||| targets:1245   UGAACUUCAGGUUGCAGAUUA   1265 Target Full Sequence	2.5	Arabidopsis thaliana Calcineurin-like metallo-phosphoesterase superfamily protein (SLP1), mRNA	Calcineurin-like metallo-phosphoesterase superfamily protein(SLP1)	coding protein	psRNATarget
NM_001123768.1	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   |=|||=|||||*||||||||| targets:1228   UGAACUUCAGGUUGCAGAUUA   1248 Target Full Sequence	2.5	Arabidopsis thaliana Calcineurin-like metallo-phosphoesterase superfamily protein (SLP1), mRNA	Calcineurin-like metallo-phosphoesterase superfamily protein(SLP1)	coding protein	psRNATarget
NM_100574.5	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   |=|||=|||||*||||||||| targets:1294   UGAACUUCAGGUUGCAGAUUA   1314 Target Full Sequence	2.5	Arabidopsis thaliana Calcineurin-like metallo-phosphoesterase superfamily protein (SLP1), mRNA	Calcineurin-like metallo-phosphoesterase superfamily protein(SLP1)	coding protein	psRNATarget