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BaseInfo

ncRNA ID ath-miRf10475-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 25
Mature sequence(if miRNA) NA - UCGUGGUCGAGUGUUGAGGUGAAGU - NA
Stem-loop(if miRNA)      GAA G GAA           U            -------A GG    AG    G    GG    G G  GAAGA                      -----  G G    AG  A
GCAAU   G U   GACACUCGGCC CGGGGUCGAGUG        U  AUCG  UGAU GUCA  UGAU G AU     CACUCGACCUCGGGGUCGAGUG     AU U AUCG  UG U
|||||   | |   ||||||||||| ||||||||||||        |  ||||  |||| ||||  |||| | ||     ||||||||||||||||||||||     || | ||||  || G
UGUUG   U G   UUGUGAGCUGG GCUUCAGCUCGC        A  UAGU  ACUG UAGU  GCUA U UA     GUGAGCUGGGGCUCCAGCUCAC     UA G UAGU  AC G
     AAG G -AG           U            AGAAGUAG GG    GG    G    GA    G G  -----                      AGAAG  G G    GG  U
Stem-loop sequence GCAAUGAAGGUGAAGACACUCGGCCUCGGGGUCGAGUGAUGGAUCGAGUGAUGGUCAGGUGAUGGGAUGAAGACACUCGACCUCGGGGUCGAGUGAUGUGAUCGAGUGAUGGUCAGGUGAUGGGAUGAAGACACUCGACCUCGGGGUCGAGUGAUGUGAUCGAGUGAUGGUCAGGUGAUGGAGAUGAAGACGCUCGACUUCGUGGUCGAGUGUUGAGGUGAAGUUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_103391.1
ncRNA:25   UGAAGUGGAGUUGUGAGCUGGUGCU   1
  |||||||||||*|||||||||||||
targets:1139   ACUUCACCUCACCACUCGACCACGA   1163

1.0 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
AY227642.1
ncRNA:25   UGAAGUGGAGUUGUGAGCUGGUGCU   1
  |||||||||||*|||||||||*|||
targets:843   ACUUCACCUCACCACUCGACCCCGA   867

2.5 Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds NA coding protein psRNATarget