ncRNA ID | ath-miRf10475-npr |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | NA |
Reference genome | NA |
Source | PNRD |
Length | 25 |
Mature sequence(if miRNA) | NA - UCGUGGUCGAGUGUUGAGGUGAAGU - NA |
Stem-loop(if miRNA) |
     GAA G GAA           U            -------A GG    AG    G    GG    G G  GAAGA                      -----  G G    AG  A GCAAU   G U   GACACUCGGCC CGGGGUCGAGUG        U  AUCG  UGAU GUCA  UGAU G AU     CACUCGACCUCGGGGUCGAGUG     AU U AUCG  UG U |||||   | |   ||||||||||| ||||||||||||        |  ||||  |||| ||||  |||| | ||     ||||||||||||||||||||||     || | ||||  || G UGUUG   U G   UUGUGAGCUGG GCUUCAGCUCGC        A  UAGU  ACUG UAGU  GCUA U UA     GUGAGCUGGGGCUCCAGCUCAC     UA G UAGU  AC G      AAG G -AG           U            AGAAGUAG GG    GG    G    GA    G G  -----                      AGAAG  G G    GG  U |
Stem-loop sequence | GCAAUGAAGGUGAAGACACUCGGCCUCGGGGUCGAGUGAUGGAUCGAGUGAUGGUCAGGUGAUGGGAUGAAGACACUCGACCUCGGGGUCGAGUGAUGUGAUCGAGUGAUGGUCAGGUGAUGGGAUGAAGACACUCGACCUCGGGGUCGAGUGAUGUGAUCGAGUGAUGGUCAGGUGAUGGAGAUGAAGACGCUCGACUUCGUGGUCGAGUGUUGAGGUGAAGUUGU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_103391.1 |
|
1.0 | Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA | DNAse I-like superfamily protein(AT1G40390) | coding protein | psRNATarget | |||||||||
AY227642.1 |
|
2.5 | Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds | NA | coding protein | psRNATarget |