| ncRNA ID | ath-miR5663-3p |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr1:18686855-18686966 [-] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 5 - UGAGAAUGCAAAUCCUUAGCU - 25 |
| Stem-loop(if miRNA) |
U ------AUU GUAUAUAGUAACAU UAUAGCUAAGGAUUUGCAUUCUCAUGAUUGA CUA U ||||||||||||||||||||||||||||||| ||| AUAUCGAUUCCUAAACGUAAGAGUACUAACU AAU A U CAAAUCACA AUCUGAAAGAAGAU |
| Stem-loop sequence | UUAUAGCUAAGGAUUUGCAUUCUCAUGAUUGAAUUCUAGUAUAUAGUAACAUUAUAGAAGAAAGUCUAUAAACACUAAACUCAAUCAUGAGAAUGCAAAUCCUUAGCUAUAU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BT020522.1 |
|
2.5 | Arabidopsis thaliana At3g27230 gene, complete cds | NA | coding protein | psRNATarget | |||||||||
| BT021996.1 |
|
2.5 | Arabidopsis thaliana At3g27230 gene, complete cds | NA | coding protein | psRNATarget | |||||||||
| AY075652.2 |
|
2.5 | Arabidopsis thaliana AT3g27230/K17E12_5 mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| NM_113637.5 |
|
2.5 | Arabidopsis thaliana S-adenosyl-L-methionine-dependent methyltransferases superfamily protein mRNA | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein(AT3G27230) | coding protein | psRNATarget |
| 1 | PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012). |