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BaseInfo

ncRNA ID	novel_ath_miR390
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr5:3867214-3867311 [+]
Reference genome	TAIR10
Source	SRR2135661
Length	21
Mature sequence(if miRNA)	78 - GCUUACUCUCUCUCUGUCACC - 98
Stem-loop(if miRNA)	--       -                    GGU   UU     ---    UU   UGACAGA AGAGAGUGAGCACACAUGGU   UUC  GCAUG   CUUU  U   ||||||| ||||||||||||||||||||   |||  |||||   ||||  G   ACUGUCU UCUCUCAUUCGUGUGUAUCG   AAG  CGUAC   GGGA  A CC       C                    ---   UU     UUU    UU
Stem-loop sequence	UGACAGAAGAGAGUGAGCACACAUGGUGGUUUCUUGCAUGCUUUUUUGAUUAGGGUUUCAUGCUUGAAGCUAUGUGUGCUUACUCUCUCUCUGUCACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_125235.4	ncRNA:21   CCACUGUCUCUCUCUCAUUCG   1   *|*|||||||||||||*|||| targets:23   AGAGACAGAGAGAGAGAAAGC   43 Target Full Sequence	2.5	Arabidopsis thaliana NAD(P)-binding Rossmann-fold superfamily protein mRNA	NAD(P)-binding Rossmann-fold superfamily protein(AT5G58490)	coding protein	psRNATarget
AY070387.1	ncRNA:21   CCACUGUCUCUCUCUCAUUCG   1   *|*|||||||||||||*|||| targets:5   AGAGACAGAGAGAGAGAAAGC   25 Target Full Sequence	2.5	Arabidopsis thaliana At5g58490 mRNA sequence	NA	coding protein	psRNATarget
AY086975.1	ncRNA:21   CCACUGUCUCUCUCUCAUUCG   1   *|*|||||||||||||*|||| targets:10   AGAGACAGAGAGAGAGAAAGC   30 Target Full Sequence	2.5	Arabidopsis thaliana clone 30064 mRNA, complete sequence	NA	coding protein	psRNATarget
NM_112157.3	ncRNA:21   CCACUGUCUCUCUCUCAUUCG   1   ***||||||||||||||*||| targets:110   AAAGACAGAGAGAGAGUUAGC   130 Target Full Sequence	2.5	Arabidopsis thaliana transmembrane protein mRNA	transmembrane protein(AT3G13175)	coding protein	psRNATarget
AY086051.1	ncRNA:21   CCACUGUCUCUCUCUCAUUCG   1   ***||||||||||||||*||| targets:21   AAAGACAGAGAGAGAGUUAGC   41 Target Full Sequence	2.5	Arabidopsis thaliana clone 2083 mRNA, complete sequence	NA	coding protein	psRNATarget