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BaseInfo

ncRNA ID novel_ath_miR384
Species Arabidopsis thaliana
Class miRNA
Genome position Chr2:3020-3185 [+]
Reference genome TAIR10
Source SRR2135661
Length 20
Mature sequence(if miRNA) 1 - GAUGGGAGUCCGGCUGUUCG - 20
Stem-loop(if miRNA) --     --       -   GUUCG       GC    G    UGA  GAAAUGUGAACCCUUGUCUCGCCUAGGUUGGAUGGGCGU
  GAUGG  GAGUCCG GCU     AAAGCCG  CAAG GUGA   AC                                       G
  |||||  ||||||| |||     |||||||  |||| ||||   ||
  CUGCC  CUUAGGU CGG     UUUCGGC  GUUC CGCU   UG                                       C
UU     UG       U   -----       AU    G    CUA  GAAGCCCUGUCGGAUCCGCCUAGGUACGAAAGGUUGCUU
Stem-loop sequence GAUGGGAGUCCGGCUGUUCGAAAGCCGGCCAAGGGUGAUGAACGAAAUGUGAACCCUUGUCUCGCCUAGGUUGGAUGGGCGUGCUUCGUUGGAAAGCAUGGAUCCGCCUAGGCUGUCCCGAAGGUAUCUCGCGCUUGUACGGCUUUGGCUUGGAUUCGUCCGUCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EF183325.1
ncRNA:20   GCUUGUCGGCCUGAGGGUAG   1
  ||||||||||||||||||||
targets:261   CGAACAGCCGGACUCCCAUC   280

0.0 Arabidopsis thaliana clone asmbl_5566 unknown mRNA sequence NA coding protein psRNATarget
NM_001203076.2
ncRNA:20   GCUUGUCGGCCUGAGGGUAG   1
  ||||||||||||||||||||
targets:169   CGAACAGCCGGACUCCCAUC   188

0.0 Arabidopsis thaliana hypothetical protein mRNA hypothetical protein(AT3G41762) coding protein psRNATarget